RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 STK35Q8TDR2 534 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 ABHD3Q8WU67 409 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 GMPPAQ96IJ6 420 aaPredicted RBP14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 DCAF13Q9NV06 445 aaKnown RBP14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 MAGEL2Q9UJ55 1249 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 RPS6KA6Q9UK32 745 aa14.78□□□□□ -0.04
CCDC28A-202ENST00000611852 IGKV1D-42A0A075B6H8 117 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 TRAPPC13A5PLN9 417 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 ARPC2O15144 300 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 DNPH1O43598 174 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 CHP2O43745 196 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 LYPD3O95274 346 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 IDUAP35475 653 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 KIR2DL2P43627 348 aaPredicted RBP14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 RNPS1Q15287 305 aaKnown RBP14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 C1orf140Q5VVS0 124 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 GTF2IRD2BQ6EKJ0 949 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 DEF8Q6ZN54 512 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 FAM214BQ7L5A3 538 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 GTF2IRD2Q86UP8 949 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 SLC43A2Q8N370 569 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 RNF217Q8TC41 542 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 SLC7A6OSQ96CW6 309 aaPredicted RBP14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 HSH2DQ96JZ2 352 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 KCNJ16Q9NPI9 418 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 GLRX2Q9NS18 164 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 CLEC4AQ9UMR7 237 aa14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 PRPF19Q9UMS4 504 aaKnown RBP14.77□□□□□ -0.04
CCDC28A-202ENST00000611852 LIPT2A6NK58 231 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 SS18L1O75177 396 aaPredicted RBP14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 PLGP00747 810 aaPredicted RBP14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 FPR1P21462 350 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 OR2B6P58173 313 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 SLC35A1P78382 337 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 H3F3AP84243 136 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 TFF3Q07654 80 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 BNIP1Q12981 228 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 IFI44LQ53G44 452 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 EEF1A1P5Q5VTE0 462 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 VWA1Q6PCB0 445 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 LINC00114Q6XXX2 140 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 FKBP9P1Q75LS8 142 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 MCEMP1Q8IX19 187 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 CNEP1R1Q8N9A8 125 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 GEMIN6Q8WXD5 167 aaKnown RBP14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 STARD4Q96DR4 205 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 ZHX1-C8orf76Q96EF9 292 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 KTI12Q96EK9 354 aaPredicted RBP14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 AMBRA1Q9C0C7 1298 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 POLR2J2Q9GZM3 115 aaKnown RBP14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 POLR2J3Q9H1A7 115 aaKnown RBP14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 PLEKHB1Q9UF11 243 aaPredicted RBP14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 SLC7A7Q9UM01 511 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 SAMD4AQ9UPU9 718 aaKnown RBP14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 SNX13Q9Y5W8 968 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 HECTD1Q9ULT8 2610 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 ZNF814B7Z6K7 855 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 PRSS44E7EML9 344 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 CYTIPO60759 359 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 PRKD3O94806 890 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 IFNW1P05000 195 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 GPIP06744 558 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 GRNP28799 593 aaKnown RBP14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 SIRPAP78324 504 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 PIN1Q13526 163 aaPredicted RBP14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 OR7A5Q15622 319 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 ABLIM2Q6H8Q1 611 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 C5orf46Q6UWT4 87 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 WDR88Q6ZMY6 472 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 GDF7Q7Z4P5 450 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 P3H2Q8IVL5 708 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 FAM86B1Q8N7N1 296 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 PTDSS2Q9BVG9 487 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 GP6Q9HCN6 339 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 JKAMPQ9P055 326 aa14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 ING1Q9UK53 422 aaPredicted RBP14.76□□□□□ -0.05
CCDC28A-202ENST00000611852 FTCDNL1E5RQL4 147 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 GYG2O15488 501 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 EIF1BO60739 113 aaKnown RBP14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 PDE5AO76074 875 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 OR5F1O95221 314 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 AHSA1O95433 338 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 RPS5P46782 204 aaKnown RBP14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 TAS2R41P59536 307 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 BTLAQ7Z6A9 289 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 MFSD8Q8NHS3 518 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 SLC41A3Q96GZ6 507 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 CLPTM1LQ96KA5 538 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 NSMCE2Q96MF7 247 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 PSD2Q9BQI7 771 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 TMEM43Q9BTV4 400 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 ZNF426Q9BUY5 554 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 TAPBPLQ9BX59 468 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 PIGMQ9H3S5 423 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 ACTR3BQ9P1U1 418 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 KLHL9Q9P2J3 617 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 KLHL13Q9P2N7 655 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 RIMS3Q9UJD0 308 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 A4GNTQ9UNA3 340 aa14.75□□□□□ -0.05
CCDC28A-202ENST00000611852 EMC9Q9Y3B6 208 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms