RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 SMURF2Q9HAU4 748 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 EXOSC3Q9NQT5 275 aaKnown RBP11.44□□□□□ -0.58
UPF1-208ENST00000600012 RYDENQ9NUL5 291 aaKnown RBP11.44□□□□□ -0.58
UPF1-208ENST00000600012 PDP1Q9P0J1 537 aaPredicted RBP11.44□□□□□ -0.58
UPF1-208ENST00000600012 B4GALT7Q9UBV7 327 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 BOKQ9UMX3 212 aaPredicted RBP11.44□□□□□ -0.58
UPF1-208ENST00000600012 CHCHD2Q9Y6H1 151 aaPredicted RBP11.44□□□□□ -0.58
UPF1-208ENST00000600012 ACANP16112 2415 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 A0A1B0GWA3 101 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 TRAPPC13A5PLN9 417 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 EIF4E2O60573 245 aaKnown RBP11.43□□□□□ -0.58
UPF1-208ENST00000600012 FMO6PO60774 539 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 CTAG2O75638 210 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 CCNB2O95067 398 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 LYPD3O95274 346 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 ENDOUP21128 410 aaKnown RBP11.43□□□□□ -0.58
UPF1-208ENST00000600012 CASP3P42574 277 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 DAG1Q14118 895 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 TRAM2Q15035 370 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 SEC23BQ15437 767 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 DCST1Q5T197 706 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 RIPPLY2Q5TAB7 128 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 SLC22A10Q63ZE4 541 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 OR5M10Q6IEU7 315 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 PPP4R4Q6NUP7 873 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 PODNL1Q6PEZ8 512 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 ARSKQ6UWY0 536 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 LIX1LQ8IVB5 337 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 MISPQ8IVT2 679 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 NKAIN4Q8IVV8 208 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 DND1Q8IYX4 353 aaKnown RBP11.43□□□□□ -0.58
UPF1-208ENST00000600012 CADM2Q8N3J6 435 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 OR10G2Q8NGC3 310 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 RNF217Q8TC41 542 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 MAGEE2Q8TD90 523 aaPredicted RBP11.43□□□□□ -0.58
UPF1-208ENST00000600012 PAQR8Q8TEZ7 354 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 GIPC3Q8TF64 312 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 DUSP19Q8WTR2 217 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 POLDIP3Q9BY77 421 aaKnown RBP11.43□□□□□ -0.58
UPF1-208ENST00000600012 POLR2J2Q9GZM3 115 aaKnown RBP11.43□□□□□ -0.58
UPF1-208ENST00000600012 GABARAPL1Q9H0R8 117 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 POLR2J3Q9H1A7 115 aaKnown RBP11.43□□□□□ -0.58
UPF1-208ENST00000600012 VCXQ9H320 206 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 ZNF703Q9H7S9 590 aaPredicted RBP11.43□□□□□ -0.58
UPF1-208ENST00000600012 TMEM27Q9HBJ8 222 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 QPCTLQ9NXS2 382 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 ALKBH4Q9NXW9 302 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 CNOT11Q9UKZ1 510 aaKnown RBP11.43□□□□□ -0.58
UPF1-208ENST00000600012 TMCC3Q9ULS5 477 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 SLC7A7Q9UM01 511 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 WIF1Q9Y5W5 379 aa11.43□□□□□ -0.58
UPF1-208ENST00000600012 A0A1W2PRQ8 180 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 B4DXG7 233 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 LINGO3P0C6S8 592 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 IFNA8P32881 189 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 IDH2P48735 452 aaKnown RBP11.42□□□□□ -0.58
UPF1-208ENST00000600012 ARHGDIAP52565 204 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 HMGA2P52926 109 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 SMIM11AP58511 58 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 RPP38P78345 283 aaKnown RBP11.42□□□□□ -0.58
UPF1-208ENST00000600012 LSM11P83369 360 aaKnown RBP eCLIP11.42□□□□□ -0.58
UPF1-208ENST00000600012 ST3GAL3Q11203 375 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 DGCR6Q14129 220 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 MICAQ29983 383 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 WDR88Q6ZMY6 472 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 TGIF2LYQ8IUE0 185 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 PACRGLQ8N7B6 248 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 B4GALNT2Q8NHY0 566 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 SLC7A13Q8TCU3 470 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 ZNF524Q96C55 264 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 NRBF2Q96F24 287 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 PRSS27Q9BQR3 290 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 FUZQ9BT04 418 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 OSBPL10Q9BXB5 764 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 TRIM2Q9C040 744 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 SH2D2AQ9NP31 389 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 ZFP64Q9NPA5 681 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 ACKR4Q9NPB9 350 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 CNIH4Q9P003 139 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 PPP4R1LQ9P1A2 415 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 KIF17Q9P2E2 1029 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 SPRR3Q9UBC9 169 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 RPS6KB2Q9UBS0 482 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 ST6GALNAC2Q9UJ37 374 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 ICAM5Q9UMF0 924 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 EDARQ9UNE0 448 aa11.42□□□□□ -0.58
UPF1-208ENST00000600012 A0A087WUU8 490 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 A0A0B4J2E0 115 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 A0A1B0GX12 115 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 SH3PXD2BA1X283 911 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 C7orf72A4D263 438 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 HSPB2A8KAH6 182 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 FAAHO00519 579 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 GNB5O14775 395 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 PIP5K1CO60331 668 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 NUDT14O95848 222 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 HPRP00739 348 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 ALPLP05186 524 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 KIR2DL3P43628 341 aa11.41□□□□□ -0.58
UPF1-208ENST00000600012 SLC6A8P48029 635 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms