RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	ATP23	Q9Y6H3	246 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776		V9GYY5	206 aa	Predicted RBP	9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	ALPK2	Q86TB3	2170 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	CFAP73	A6NFT4	308 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	ATP6V1G2-DDX39B	F2Z307	99 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	SDHD	O14521	159 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	RGS16	O15492	202 aa	Predicted RBP	9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	ZNF208	O43345	1280 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	EIF1B	O60739	113 aa	Known RBP	9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	AKR7A3	O95154	331 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	NR2F1	P10589	423 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	CDH2	P19022	906 aa	Predicted RBP	9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	RPS4Y1	P22090	263 aa	Known RBP	9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	FKBP2	P26885	142 aa	Known RBP	9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	SLC1A3	P43003	542 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	HTR3A	P46098	478 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	EPS8	Q12929	822 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	STX3	Q13277	289 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	CEACAM7	Q14002	265 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	DPY19L1	Q2PZI1	675 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	CHRFAM7A	Q494W8	412 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	OTUD3	Q5T2D3	398 aa	Predicted RBP	9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	PODNL1	Q6PEZ8	512 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	PAQR6	Q6TCH4	344 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	LRRC74B	Q6ZQY2	392 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	ZNF621	Q6ZSS3	439 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	CMIP	Q8IY22	773 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	DEPDC4	Q8N2C3	294 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	TMEM99	Q8N816	258 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	ZIC4	Q8N9L1	334 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	C1orf162	Q8NEQ5	155 aa	Predicted RBP	9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	NANOS1	Q8WY41	292 aa	Known RBP	9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	PMM1	Q92871	262 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	ZNF385A	Q96PM9	386 aa	Known RBP	9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	OR52E6	Q96RD3	313 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	TNFRSF13C	Q96RJ3	184 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	NAA11	Q9BSU3	229 aa	Predicted RBP	9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	MEAF6	Q9HAF1	191 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	AIG1	Q9NVV5	245 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	HAO1	Q9UJM8	370 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	DCTN4	Q9UJW0	460 aa		9.22	□□□□□ -0.93
LSM4-205	ENST00000597776	LIPT2	A6NK58	231 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	ELOA3D	A6NLF2	546 aa	Predicted RBP	9.21	□□□□□ -0.94
LSM4-205	ENST00000597776		H7C417	338 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	FAAH	O00519	579 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	KLF11	O14901	512 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	TM9SF1	O15321	606 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	IFNA2	P01563	188 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	PGR	P06401	933 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	GKN3P	P0CG01	181 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	IL7R	P16871	459 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	MPG	P29372	298 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	DSCR9	P59020	149 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	LGALS3BP	Q08380	585 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	LOXL1	Q08397	574 aa	Predicted RBP	9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	BST1	Q10588	318 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	BNIP2	Q12982	314 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	OR7A5	Q15622	319 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	MAPK11	Q15759	364 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	ELOA3B	Q3SY89	546 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	HIKESHI	Q53FT3	197 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	OGFOD2	Q6N063	350 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	ZNF544	Q6NX49	715 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	WDR93	Q6P2C0	686 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	VRK2	Q86Y07	508 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	C17orf78	Q8N4C9	275 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	TRIML2	Q8N7C3	387 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	ELOA3	Q8NG57	546 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	OR9K2	Q8NGE7	335 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	C10orf105	Q8TEF2	133 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	FAM168A	Q92567	244 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	PAIP2	Q9BPZ3	127 aa	Known RBP	9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	CENPH	Q9H3R5	247 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	WDR55	Q9H6Y2	383 aa	Predicted RBP	9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	MTHFD2L	Q9H903	347 aa	Predicted RBP	9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	FKRP	Q9H9S5	495 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	SSU72	Q9NP77	194 aa	Known RBP	9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	KCNK9	Q9NPC2	374 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	SLC6A13	Q9NSD5	602 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	PARPBP	Q9NWS1	579 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	MOK	Q9UQ07	419 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	AMDHD2	Q9Y303	409 aa		9.21	□□□□□ -0.94
LSM4-205	ENST00000597776	CDHR4	A6H8M9	788 aa		9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	AQP7P3	A6NL99	342 aa		9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	PHF1	O43189	567 aa	Predicted RBP	9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	SNUPN	O95149	360 aa	Known RBP	9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	GPI	P06744	558 aa		9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	DBI	P07108	87 aa	Known RBP	9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	FAM157C	P0CG43	387 aa		9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	PRG2	P13727	222 aa		9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	ETFA	P13804	333 aa		9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	UQCRB	P14927	111 aa		9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	SLC25A16	P16260	332 aa		9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	ZNF16	P17020	682 aa	Predicted RBP	9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	CXCR1	P25024	350 aa		9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	EPHA3	P29320	983 aa		9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	ACAA2	P42765	397 aa	Known RBP	9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	ANXA11	P50995	505 aa	Known RBP	9.2	□□□□□ -0.94
LSM4-205	ENST00000597776	EFNA4	P52798	201 aa		9.2	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms