RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 DSCR4P56555 118 aaPredicted RBP8.51□□□□□ -1.05
TRIM28-208ENST00000597172 SMIM11AP58511 58 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 B3GALT5-AS1P59052 145 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 LAPTM4AQ15012 233 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 TRAM2Q15035 370 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 MICAQ29983 383 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 ALG10BQ5I7T1 473 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 LPCAT4Q643R3 524 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 SHQ1Q6PI26 577 aaKnown RBP8.51□□□□□ -1.05
TRIM28-208ENST00000597172 TMEM178AQ8NBL3 297 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 ACBD4Q8NC06 268 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 OR5M1Q8NGP8 315 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 TMEM255BQ8WV15 326 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 DNAJA4Q8WW22 397 aaPredicted RBP8.51□□□□□ -1.05
TRIM28-208ENST00000597172 ST8SIA1Q92185 356 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 NRBF2Q96F24 287 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 ZNF597Q96LX8 424 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 SLC29A1Q99808 456 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 TTTY12Q9BZ98 90 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 ANKRD19PQ9H560 264 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 PTGES2Q9H7Z7 377 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 REEP1Q9H902 201 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 C12orf10Q9HB07 376 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 RPS6KB2Q9UBS0 482 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 OAZ3Q9UMX2 235 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 MRPS18CQ9Y3D5 142 aaKnown RBP8.51□□□□□ -1.05
TRIM28-208ENST00000597172 HEATR5AQ86XA9 2040 aa8.51□□□□□ -1.05
TRIM28-208ENST00000597172 ZANQ9Y493 2812 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 IGKV1D-42A0A075B6H8 117 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 TMED7-TICAM2A0A0A6YYA0 188 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 TMEM72A0PK05 275 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 G3V2T6 193 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 PDLIM1O00151 329 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 SOCS2O14508 198 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 HPNP05981 417 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 CELA3AP09093 270 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 UQCRBP14927 111 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 HK1P19367 917 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 IL11P20809 199 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 PTNP21246 168 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 SRD5A2P31213 254 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 GCKP35557 465 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 APOBEC1P41238 236 aaKnown RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 DAPP51397 102 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 ZNF41P51814 821 aaPredicted RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 POLR2HP52434 150 aaKnown RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 UGT2B15P54855 530 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 PMP22Q01453 160 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 EGR4Q05215 589 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 MERTKQ12866 999 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 FOXF1Q12946 379 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 ZNF169Q14929 603 aaPredicted RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 GLYR1Q49A26 553 aaPredicted RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 FGD3Q5JSP0 725 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 DCST1Q5T197 706 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 SWT1Q5T5J6 900 aaKnown RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 OGFRL1Q5TC84 451 aaPredicted RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 ZNF770Q6IQ21 691 aaPredicted RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 GRINAQ7Z429 371 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 ZER1Q7Z7L7 766 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 YRDCQ86U90 279 aaKnown RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 P3H2Q8IVL5 708 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 PHC2Q8IXK0 858 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 GTPBP8Q8N3Z3 284 aaPredicted RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 TMEM251Q8N6I4 163 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 ICA1LQ8NDH6 482 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 FAM83FQ8NEG4 500 aaPredicted RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 GIPC3Q8TF64 312 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 TMEM234Q8WY98 164 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 MRGPRX4Q96LA9 322 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 GPA33Q99795 319 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 CIB1Q99828 191 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 ZNF703Q9H7S9 590 aaPredicted RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 COQ10BQ9H8M1 238 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 MEPEQ9NQ76 525 aaPredicted RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 PDP1Q9P0J1 537 aaPredicted RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 STOML1Q9UBI4 398 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 BOKQ9UMX3 212 aaPredicted RBP8.5□□□□□ -1.05
TRIM28-208ENST00000597172 TMED7Q9Y3B3 224 aa8.5□□□□□ -1.05
TRIM28-208ENST00000597172 ANK2Q01484 3957 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 C7orf72A4D263 438 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 FAM166BA8MTA8 275 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 PIP5K1CO60331 668 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 NPIPB7O75200 414 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 E2F6O75461 281 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 TRAPPC6AO75865 159 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 CCNB2O95067 398 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 GASTP01350 101 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 PNMTP11086 282 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 ZNF23P17027 643 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 ZNF26P17031 533 aaPredicted RBP8.49□□□□□ -1.05
TRIM28-208ENST00000597172 CCNA2P20248 432 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 TCEA1P23193 301 aaKnown RBP8.49□□□□□ -1.05
TRIM28-208ENST00000597172 CXCR1P25024 350 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 GDF1P27539 372 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 PEX2P28328 305 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 ADH6P28332 368 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 IFNA8P32881 189 aa8.49□□□□□ -1.05
TRIM28-208ENST00000597172 RBM34P42696 430 aaKnown RBP8.49□□□□□ -1.05
TRIM28-208ENST00000597172 CA7P43166 264 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms