RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 FABP3P05413 133 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 RNF224P0DH78 156 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 PNMTP11086 282 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 UQCRBP14927 111 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 ZNF26P17031 533 aaPredicted RBP8.31□□□□□ -1.08
VPS35-211ENST00000569950 CXCR1P25024 350 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 SLC7A1P30825 629 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 NTF4P34130 210 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 CLK1P49759 484 aaKnown RBP8.31□□□□□ -1.08
VPS35-211ENST00000569950 DIO1P49895 249 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 MAP2K6P52564 334 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 AGFG1P52594 562 aaKnown RBP8.31□□□□□ -1.08
VPS35-211ENST00000569950 IST1P53990 364 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 TAS2R41P59536 307 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 SRYQ05066 204 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 PPP1R8Q12972 351 aaKnown RBP8.31□□□□□ -1.08
VPS35-211ENST00000569950 ZNF239Q16600 458 aaKnown RBP8.31□□□□□ -1.08
VPS35-211ENST00000569950 EIF2S3LQ2VIR3 472 aaKnown RBP8.31□□□□□ -1.08
VPS35-211ENST00000569950 C1orf140Q5VVS0 124 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 PODNL1Q6PEZ8 512 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 RPTNQ6XPR3 784 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 TMPPEQ6ZT21 453 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 SPATA24Q86W54 205 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 MEX3DQ86XN8 651 aaKnown RBP8.31□□□□□ -1.08
VPS35-211ENST00000569950 C9orf106Q8NAJ2 232 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 ATP6V1C2Q8NEY4 427 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 PFN4Q8NHR9 129 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 FNDC9Q8TBE3 224 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 STK35Q8TDR2 534 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 SLC25A43Q8WUT9 341 aaPredicted RBP8.31□□□□□ -1.08
VPS35-211ENST00000569950 SMPDL3BQ92485 455 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 MPP4Q96JB8 637 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 ANKRD19PQ9H560 264 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 ARMC1Q9NVT9 282 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 B3GAT1Q9P2W7 334 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 CAMK2AQ9UQM7 478 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 OSGIN2Q9Y236 505 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 TRAPPC4Q9Y296 219 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 TESMINQ9Y4I5 508 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 HCFC1P51610 2035 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 IGHV3-15A0A0B4J1V0 119 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 SH3PXD2BA1X283 911 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 MBD3L4A6NDZ8 208 aaPredicted RBP8.3□□□□□ -1.08
VPS35-211ENST00000569950 MBD3L3A6NE82 208 aaPredicted RBP8.3□□□□□ -1.08
VPS35-211ENST00000569950 MBD3L5A6NJ08 208 aaPredicted RBP8.3□□□□□ -1.08
VPS35-211ENST00000569950 CD8B2A6NJW9 211 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ELOA3DA6NLF2 546 aaPredicted RBP8.3□□□□□ -1.08
VPS35-211ENST00000569950 AHRRA9YTQ3 701 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 FAM47E-STBD1D6RA91 191 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 CDC42EP2O14613 210 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 GMNNO75496 209 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 TIPRLO75663 272 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 HPRP00739 348 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 IGF2P01344 180 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 TPOP07202 933 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 H1F0P07305 194 aaKnown RBP8.3□□□□□ -1.08
VPS35-211ENST00000569950 GLI4P10075 376 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ABOP16442 354 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 FUT1P19526 365 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 MAKP20794 623 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ENPP1P22413 925 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 EDNRAP25101 427 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ACVR2AP27037 513 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 RRM2P31350 389 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 CEACAM8P31997 349 aaPredicted RBP8.3□□□□□ -1.08
VPS35-211ENST00000569950 RBM34P42696 430 aaKnown RBP8.3□□□□□ -1.08
VPS35-211ENST00000569950 RPS5P46782 204 aaKnown RBP8.3□□□□□ -1.08
VPS35-211ENST00000569950 OMPP47874 163 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 CTBP2P56545 445 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 FXYD6P3P58550 94 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 RAC3P60763 192 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ADORA2A-AS1P86434 159 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 CHRNB3Q05901 458 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ST3GAL3Q11203 375 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 LAPTM4AQ15012 233 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 CDSNQ15517 529 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ZNF74Q16587 644 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ELOA3BQ3SY89 546 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 FAM98BQ52LJ0 330 aaKnown RBP8.3□□□□□ -1.08
VPS35-211ENST00000569950 C1orf185Q5T7R7 199 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 NSUN5P2Q63ZY6 315 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ANKRD34AQ69YU3 496 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 HBMQ6B0K9 141 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ABLIM2Q6H8Q1 611 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 OR2T5Q6IEZ7 315 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 HS3ST5Q8IZT8 346 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 LRRC17Q8N6Y2 441 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ELOA3Q8NG57 546 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 OR2T29Q8NH02 315 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 OR6S1Q8NH40 331 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 MFSD8Q8NHS3 518 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 MBD3L2Q8NHZ7 208 aaPredicted RBP8.3□□□□□ -1.08
VPS35-211ENST00000569950 RNF128Q8TEB7 428 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 TMEM239Q8WW34 195 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 LIPHQ8WWY8 451 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 PYDC1Q8WXC3 89 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 ACOT11Q8WXI4 607 aaPredicted RBP8.3□□□□□ -1.08
VPS35-211ENST00000569950 OSTF1Q92882 214 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 DTNBP1Q96EV8 351 aa8.3□□□□□ -1.08
VPS35-211ENST00000569950 LRGUKQ96M69 825 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms