RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 PPIL1Q9Y3C6 166 aa10.46□□□□□ -0.73
LDLR-208ENST00000558518 TRAV18A0A075B6X5 111 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 OR2W5A6NFC9 320 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 SLC31A1O15431 190 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 ATG12O94817 140 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 ZNF888P0CJ79 500 aaPredicted RBP10.46□□□□□ -0.74
LDLR-208ENST00000558518 IL9P15248 144 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 SRMP19623 302 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 MMP15P51511 669 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 PGDP52209 483 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 SIRPAP78324 504 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 ZNF273Q14593 569 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 PRRT3Q5FWE3 981 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 CD300LDQ6UXZ3 194 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 BRIX1Q8TDN6 353 aaKnown RBP10.46□□□□□ -0.74
LDLR-208ENST00000558518 RASD2Q96D21 266 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 ZNF649Q9BS31 505 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 ACTRT3Q9BYD9 372 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 ACTR6Q9GZN1 396 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 CHST6Q9GZX3 395 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 OR52A5Q9H2C5 316 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 TMEM27Q9HBJ8 222 aa10.46□□□□□ -0.74
LDLR-208ENST00000558518 ZNF230Q9UIE0 474 aaPredicted RBP10.46□□□□□ -0.74
LDLR-208ENST00000558518 TRAPPC13A5PLN9 417 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 DISC1C4P0D8 188 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 MCRIP1C9JLW8 97 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 CACNB4O00305 520 aaPredicted RBP10.45□□□□□ -0.74
LDLR-208ENST00000558518 CBR1P16152 277 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 HIST1H1CP16403 213 aaKnown RBP10.45□□□□□ -0.74
LDLR-208ENST00000558518 KLF9Q13886 244 aaPredicted RBP10.45□□□□□ -0.74
LDLR-208ENST00000558518 PON3Q15166 354 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 DECR1Q16698 335 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 TMEM44Q2T9K0 475 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 STPG1Q5TH74 334 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 MRM1Q6IN84 353 aaKnown RBP10.45□□□□□ -0.74
LDLR-208ENST00000558518 UNQ6126/PRO20091Q6UXV3 157 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 MAMSTRQ6ZN01 415 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 GRASPQ7Z6J2 395 aaPredicted RBP10.45□□□□□ -0.74
LDLR-208ENST00000558518 OR51S1Q8NGJ8 323 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 SMIM4Q8WVI0 70 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 DMRTA2Q96SC8 542 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 TSNAXQ99598 290 aaKnown RBP10.45□□□□□ -0.74
LDLR-208ENST00000558518 IL21RQ9HBE5 538 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 CAMK2AQ9UQM7 478 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 EXOGQ9Y2C4 368 aaKnown RBP10.45□□□□□ -0.74
LDLR-208ENST00000558518 M0QYG6 137 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 RPN2P04844 631 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 ADRB3P13945 408 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 ZP3P21754 424 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 HTR2AP28223 471 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 NRG3P56975 720 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 AP3S2P59780 193 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 GMFBP60983 142 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 CBFBQ13951 182 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 PAQR7Q86WK9 346 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 TCEAL8Q8IYN2 117 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 IL17RCQ8NAC3 791 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 TRIM43Q96BQ3 446 aaPredicted RBP10.45□□□□□ -0.74
LDLR-208ENST00000558518 AICDAQ9GZX7 198 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 ADGRL4Q9HBW9 690 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 FBXO4Q9UKT5 387 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 LATS1O95835 1130 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 IFNGP01579 166 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 PTBP1P26599 531 aaKnown RBP eCLIP10.45□□□□□ -0.742e-11■□□□□ 9.4
LDLR-208ENST00000558518 FXYD6P3P58550 94 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 MPP7Q5T2T1 576 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 PARGQ86W56 976 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 ZNF676Q8N7Q3 588 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 OR5K2Q8NHB8 316 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 OR8D1Q8WZ84 308 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 LMLNQ96KR4 655 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 EVA1AQ9H8M9 152 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 ASF1BQ9NVP2 202 aa10.45□□□□□ -0.74
LDLR-208ENST00000558518 MRPS18AQ9NVS2 196 aaKnown RBP10.45□□□□□ -0.74
LDLR-208ENST00000558518 MDC1Q14676 2089 aaKnown RBP10.45□□□□□ -0.74
LDLR-208ENST00000558518 PLXNB3Q9ULL4 1909 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 F5H5P2 479 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 RBBP9O75884 186 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 GPANK1O95872 356 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 DDX6P26196 483 aaKnown RBP eCLIP10.44□□□□□ -0.742e-8■■□□□ 14
LDLR-208ENST00000558518 LUMP51884 338 aaPredicted RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 ETFDHQ16134 617 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 SLC25A30Q5SVS4 291 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 SEZ6L2Q6UXD5 910 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 TPRA1Q86W33 373 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 SLC35F2Q8IXU6 374 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 GJD3Q8N144 294 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 OR51D1Q8NGF3 324 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 OR52H1Q8NGJ2 320 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 STK35Q8TDR2 534 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 THEM6Q8WUY1 208 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 TSEN15Q8WW01 171 aaKnown RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 MS4A6EQ96DS6 147 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 POLMQ9NP87 494 aaPredicted RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 APOBEC3BQ9UH17 382 aaKnown RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 MOKQ9UQ07 419 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 GXYLT2A0PJZ3 443 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 TMEM72A0PK05 275 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 ZNF879B4DU55 563 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 PRRT4C9JH25 899 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms