RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 RBM45Q8IUH3 476 aaKnown RBP12.13□□□□□ -0.47
SHMT2-228ENST00000557302 DEFB107AQ8IZN7 70 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 RNF148Q8N7C7 305 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 OR4D11Q8NGI4 311 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 OR6K3Q8NGY3 331 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 STK35Q8TDR2 534 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 FAM162AQ96A26 154 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 STARD4Q96DR4 205 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 TPD52L3Q96J77 140 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 CDRT15Q96T59 188 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 TACO1Q9BSH4 297 aaKnown RBP12.13□□□□□ -0.47
SHMT2-228ENST00000557302 TAPBPLQ9BX59 468 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 GP6Q9HCN6 339 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 NPDC1Q9NQX5 325 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-228ENST00000557302 ADPRHL2Q9NX46 363 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 JKAMPQ9P055 326 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 KLHL9Q9P2J3 617 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 KLHL13Q9P2N7 655 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 PROCRQ9UNN8 238 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 SH3GLB1Q9Y371 365 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 CRYBG3Q68DQ2 2970 aa12.13□□□□□ -0.47
SHMT2-228ENST00000557302 LIPT2A6NK58 231 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 CPSF4LA6NMK7 179 aaKnown RBP12.12□□□□□ -0.47
SHMT2-228ENST00000557302 MSTNO14793 375 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 EIF1BO60739 113 aaKnown RBP12.12□□□□□ -0.47
SHMT2-228ENST00000557302 CYTIPO60759 359 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 NPIPB7O75200 414 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 GMNNO75496 209 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 ZNF682O95780 498 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 IMPDH2P12268 514 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 HSD17B1P14061 328 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 NCK1P16333 377 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 GGT1P19440 569 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 KLK2P20151 261 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 FPR1P21462 350 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 AGTR1P30556 359 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 UQCRC1P31930 480 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 SELENOWP63302 87 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 RASGEF1BQ0VAM2 473 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 CEACAM7Q14002 265 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 ENTPD8Q5MY95 495 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 TMEM201Q5SNT2 666 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 C5orf46Q6UWT4 87 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 TRPM8Q7Z2W7 1104 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 LUZP2Q86TE4 346 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 PIGXQ8TBF5 258 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 RNASE6Q93091 150 aaKnown RBP12.12□□□□□ -0.47
SHMT2-228ENST00000557302 SLC38A4Q969I6 547 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 PCDHAC1Q9H158 963 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 EGFL7Q9UHF1 273 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 FOXD3Q9UJU5 478 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-228ENST00000557302 CENPEQ02224 2701 aa12.12□□□□□ -0.47
SHMT2-228ENST00000557302 CELSR2Q9HCU4 2923 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 NBPF19A0A087WUL8 3843 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 A0A087WUJ7 227 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 TRAPPC13A5PLN9 417 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 SERPINA1P01009 418 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 YES1P07947 543 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 CD8BP10966 210 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 COX6B1P14854 86 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 TCN1P20061 433 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-228ENST00000557302 TNFRSF1BP20333 461 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 CPOXP36551 454 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 OR1E2P47887 323 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 CDH12P55289 794 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 EGR4Q05215 589 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 OR7A5Q15622 319 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 SPATS1Q496A3 300 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 ABLIM2Q6H8Q1 611 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 PAQR6Q6TCH4 344 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 MEX3BQ6ZN04 569 aaKnown RBP12.11□□□□□ -0.47
SHMT2-228ENST00000557302 DEF8Q6ZN54 512 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 CBLL1Q75N03 491 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 TUSC5Q8IXB3 177 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 FAM156AQ8NDB6 213 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 RBM15BQ8NDT2 890 aaKnown RBP12.11□□□□□ -0.47
SHMT2-228ENST00000557302 ADAMTS16Q8TE57 1224 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 SPOCK3Q9BQ16 436 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 PSD2Q9BQI7 771 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 NAA11Q9BSU3 229 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-228ENST00000557302 RBM24Q9BX46 236 aaKnown RBP12.11□□□□□ -0.47
SHMT2-228ENST00000557302 ENKD1Q9H0I2 346 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 OPN3Q9H1Y3 402 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-228ENST00000557302 BCO1Q9HAY6 547 aa12.11□□□□□ -0.47
SHMT2-228ENST00000557302 IGKV1D-42A0A075B6H8 117 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 ZNF724A8MTY0 619 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 A8MXE2 369 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 HNRNPRO43390 633 aaKnown RBP12.1□□□□□ -0.47
SHMT2-228ENST00000557302 CHP2O43745 196 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 CGAP01215 116 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 T-ENOLP0DO92 83 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 IGFBP2P18065 325 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 PEX19P40855 299 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 RPS5P46782 204 aaKnown RBP12.1□□□□□ -0.47
SHMT2-228ENST00000557302 H3F3AP84243 136 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 PDK3Q15120 406 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 ZNF787Q6DD87 383 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 GLYATQ6IB77 296 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 VTCN1Q7Z7D3 282 aa12.1□□□□□ -0.47
SHMT2-228ENST00000557302 STK32CQ86UX6 486 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms