RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 SUN3Q8TAQ9 357 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 NANPQ8TBE9 248 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 SFXN5Q8TD22 340 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 LKAAEAR1Q8TD35 194 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 ASZ1Q8WWH4 475 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 ACOT11Q8WXI4 607 aaPredicted RBP6.18□□□□□ -1.42
USP28-207ENST00000538475 OVCA2Q8WZ82 227 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 TIFAQ96CG3 184 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 ECHDC3Q96DC8 303 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 VWCEQ96DN2 955 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 TMEM19Q96HH6 336 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 ZFP3Q96NJ6 502 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 TAAR9Q96RI9 348 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 SLC25A21Q9BQT8 299 aaPredicted RBP6.18□□□□□ -1.42
USP28-207ENST00000538475 ALG8Q9BVK2 526 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 PAPOLGQ9BWT3 736 aaKnown RBP6.18□□□□□ -1.42
USP28-207ENST00000538475 C1QTNF6Q9BXI9 259 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 CHIAQ9BZP6 476 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 TWSG1Q9GZX9 223 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 CDCP1Q9H5V8 836 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 RERGLQ9H628 205 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 IL26Q9NPH9 171 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 NIT2Q9NQR4 276 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 MMP26Q9NRE1 261 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 MRPL17Q9NRX2 175 aaKnown RBP6.18□□□□□ -1.42
USP28-207ENST00000538475 SLC22A11Q9NSA0 550 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 TMEM100Q9NV29 134 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 FAM86C1Q9NVL1 165 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 TAS2R10Q9NYW0 307 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 PPP4R1LQ9P1A2 415 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 CFAP97Q9P2B7 532 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 FBXL4Q9UKA2 621 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 ERVK-19Q9WJR5 959 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 PPIL1Q9Y3C6 166 aa6.18□□□□□ -1.42
USP28-207ENST00000538475 FXYD6-FXYD2A0A087WZ82 144 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 A0A0G2JLL6 359 aaPredicted RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 DAPL1A0PJW8 107 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 SMIM30A4D0T7 59 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 TMEM189-UBE2V1I3L0A0 370 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 KLF4O43474 513 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 TSPAN3O60637 253 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 SH3BGRLO75368 114 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 F2P00734 622 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 C1QCP02747 245 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 GBAP04062 536 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 IGFBP1P08833 259 aaPredicted RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 SMIM10L2AP0DMW4 78 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 SMIM10L2BP0DMW5 78 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 NME1P15531 152 aaKnown RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 AGAP20933 346 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 NT5EP21589 574 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 CFPP27918 469 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 PDHA2P29803 388 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 CD79BP40259 229 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 PTGFRP43088 359 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 RGRP47804 291 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 RAB5CP51148 216 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 ACTA2P62736 377 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 TRA2BP62995 288 aaKnown RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 ACTG2P63267 376 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 EFEMP1Q12805 493 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 PDZK1IP1Q13113 114 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 TUSC3Q13454 348 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 CDKN3Q16667 212 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 ACSM3Q53FZ2 586 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 MANEAQ5SRI9 462 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 AWAT2Q6E213 333 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 SFRP4Q6FHJ7 346 aaPredicted RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 EIF5AL1Q6IS14 154 aaKnown RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 ZNF425Q6IV72 752 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 CXorf57Q6NSI4 855 aaKnown RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 APOOLQ6UXV4 268 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 TMEM64Q6YI46 380 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 ZNF852Q6ZMS4 543 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 TPGS1Q6ZTW0 290 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 OR2W3Q7Z3T1 314 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 BCDIN3DQ7Z5W3 292 aaKnown RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 PRRT2Q7Z6L0 340 aaPredicted RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 CTU1Q7Z7A3 348 aaKnown RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 ZNF546Q86UE3 836 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 IQCHQ86VS3 1027 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 C1QL4Q86Z23 238 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 IQCF1Q8N6M8 205 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 OR5D16Q8NGK9 328 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 RNASE11Q8TAA1 199 aaKnown RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 ZNF671Q8TAW3 534 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 C2orf15Q8WU43 125 aaKnown RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 XAGE5Q8WWM1 108 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 THAP4Q8WY91 577 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 GTF3AQ92664 365 aaKnown RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 RBM18Q96H35 190 aaKnown RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 ART5Q96L15 291 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 BCL2L14Q9BZR8 327 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 FXYD6Q9H0Q3 95 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 OR10A4Q9H209 315 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 SLCO5A1Q9H2Y9 848 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 OR51I1Q9H343 314 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 ZNF768Q9H5H4 540 aaKnown RBP6.17□□□□□ -1.42
USP28-207ENST00000538475 BPIFA1Q9NP55 256 aa6.17□□□□□ -1.42
USP28-207ENST00000538475 NRIP3Q9NQ35 241 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms