RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 PMPCAQ10713 525 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 IQCCQ4KMZ1 466 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 C1orf140Q5VVS0 124 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 ZNF787Q6DD87 383 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 PPP4R4Q6NUP7 873 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 TMPPEQ6ZT21 453 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 YTHDF3Q7Z739 585 aaKnown RBP12.55□□□□□ -0.4
USF1-209ENST00000529476 NKAIN4Q8IVV8 208 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 AQP12AQ8IXF9 295 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 FNDC9Q8TBE3 224 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 STK35Q8TDR2 534 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 KTI12Q96EK9 354 aaPredicted RBP12.55□□□□□ -0.4
USF1-209ENST00000529476 ZNF300Q96RE9 604 aaPredicted RBP12.55□□□□□ -0.4
USF1-209ENST00000529476 UCN2Q96RP3 112 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 PRSS27Q9BQR3 290 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 FNDC11Q9BVV2 318 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 POTEKPQ9BYX7 375 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 CALHM2Q9HA72 323 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 ERRFI1Q9UJM3 462 aaPredicted RBP12.55□□□□□ -0.4
USF1-209ENST00000529476 SLC5A6Q9Y289 635 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 HDGFL3Q9Y3E1 203 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 MED12LQ86YW9 2145 aa12.55□□□□□ -0.4
USF1-209ENST00000529476 SLC22A20A6NK97 555 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 AQP8O94778 261 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 TOXO94900 526 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 AGFG2O95081 481 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 PRSS23O95084 383 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 SYNGR4O95473 234 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 PMS2P2O95744 297 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 MT-ND1P03886 318 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 FABP3P05413 133 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 KLK2P20151 261 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 IDUAP35475 653 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 RPS5P46782 204 aaKnown RBP12.54□□□□□ -0.4
USF1-209ENST00000529476 RIPPLY3P57055 190 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 OR2B6P58173 313 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 RAC3P60763 192 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 ST3GAL3Q11203 375 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 C1orf146Q5VVC0 180 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 TMEM211Q6ICI0 200 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 P4HA3Q7Z4N8 544 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 CYP4Z1Q86W10 505 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 SPATA24Q86W54 205 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 ZDHHC21Q8IVQ6 265 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 ADGRG5Q8IZF4 528 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 OFCC1Q8IZS5 231 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 C9orf106Q8NAJ2 232 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 TMEM255BQ8WV15 326 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 ROBO4Q8WZ75 1007 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 WNT2BQ93097 391 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 CCDC120Q96HB5 630 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 MPP4Q96JB8 637 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 TMEM43Q9BTV4 400 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 PTDSS2Q9BVG9 487 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 IL1RAPQ9NPH3 570 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 TIGARQ9NQ88 270 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 MAN2C1Q9NTJ4 1040 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 PAQR5Q9NXK6 330 aaPredicted RBP12.54□□□□□ -0.4
USF1-209ENST00000529476 TRAPPC4Q9Y296 219 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 FAM32AQ9Y421 112 aaKnown RBP12.54□□□□□ -0.4
USF1-209ENST00000529476 ZNF175Q9Y473 711 aa12.54□□□□□ -0.4
USF1-209ENST00000529476 IGHV3-15A0A0B4J1V0 119 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 TCRBV3S1A0A5B6 114 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 A1L4Q6 167 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 MBD3L4A6NDZ8 208 aaPredicted RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 MBD3L3A6NE82 208 aaPredicted RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 MBD3L5A6NJ08 208 aaPredicted RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 LIPT2A6NK58 231 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 KPNA4O00629 521 aaPredicted RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 AHSA1O95433 338 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 THRBP10828 461 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 ITGA2P17301 1181 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 RHCEP18577 417 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 FPR1P21462 350 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 ENPP1P22413 925 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 COL8A1P27658 744 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 IFNA8P32881 189 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 CSNK2A1P68400 391 aaPredicted RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 ADORA2A-AS1P86434 159 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 CHRNB3Q05901 458 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 OR7A5Q15622 319 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 ZNF239Q16600 458 aaKnown RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 ZSCAN26Q16670 478 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 FAM98BQ52LJ0 330 aaKnown RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 TTC33Q6PID6 262 aaPredicted RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 PIK3C3Q8NEB9 887 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 MBD3L2Q8NHZ7 208 aaPredicted RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 CANT1Q8WVQ1 401 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 TAAR8Q969N4 342 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 CPNE4Q96A23 557 aaPredicted RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 PIP5K1AQ99755 562 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 ZNF426Q9BUY5 554 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 PRRG4Q9BZD6 226 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 MAGIXQ9H6Y5 334 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 MCTS1Q9ULC4 181 aaKnown RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 AURKCQ9UQB9 309 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 NCOA6Q14686 2063 aaPredicted RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 FBN2P35556 2912 aa12.53□□□□□ -0.4
USF1-209ENST00000529476 DIDO1Q9BTC0 2240 aaKnown RBP12.53□□□□□ -0.4
USF1-209ENST00000529476 TRAV36DV7A0A075B6V5 113 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms