RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 A0A087WUJ7 227 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 A0A0B4J2E0 115 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 A0A1B0GWA3 101 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 A0A1B0GX12 115 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 C7orf72A4D263 438 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 CPSF4LA6NMK7 179 aaKnown RBP6.69□□□□□ -1.34
CD44-228ENST00000528455 FAM47E-STBD1D6RA91 191 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 G3V2T6 193 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 J3KTA2 159 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 TNFRSF11BO00300 401 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 CASQ2O14958 399 aaPredicted RBP6.69□□□□□ -1.34
CD44-228ENST00000528455 FRS3O43559 492 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 CHP2O43745 196 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 NTN1O95631 604 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 NUDT14O95848 222 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 F10P00742 488 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 THY1P04216 161 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 PRKCAP17252 672 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 CXCR1P25024 350 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 DPP4P27487 766 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 HTR2AP28223 471 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 SRD5A2P31213 254 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 IFNGR2P38484 337 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 RBM34P42696 430 aaKnown RBP6.69□□□□□ -1.34
CD44-228ENST00000528455 YAP1P46937 504 aaKnown RBP6.69□□□□□ -1.34
CD44-228ENST00000528455 MASP1P48740 699 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 DNASE1L1P49184 302 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 ZNF41P51814 821 aaPredicted RBP6.69□□□□□ -1.34
CD44-228ENST00000528455 CDH12P55289 794 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 HOXC5Q00444 222 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 SLC10A1Q14973 349 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 QPRTQ15274 297 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 INPP5JQ15735 1006 aaPredicted RBP6.69□□□□□ -1.34
CD44-228ENST00000528455 MICAQ29983 383 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 ALG10BQ5I7T1 473 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 DCST1Q5T197 706 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 PRAMEF20Q5VT98 475 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 HMBOX1Q6NT76 420 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 SHQ1Q6PI26 577 aaKnown RBP6.69□□□□□ -1.34
CD44-228ENST00000528455 DEF8Q6ZN54 512 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 RRM2BQ7LG56 351 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 GRINAQ7Z429 371 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 GDF7Q7Z4P5 450 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 GALNTL5Q7Z4T8 443 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 AMIGO2Q86SJ2 522 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 ADGRG3Q86Y34 549 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 HIPK1Q86Z02 1210 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 OFCC1Q8IZS5 231 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 TEX19Q8NA77 164 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 FAM98AQ8NCA5 519 aaKnown RBP6.69□□□□□ -1.34
CD44-228ENST00000528455 OR4K17Q8NGC6 315 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 OR5K1Q8NHB7 308 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 SLC7A13Q8TCU3 470 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 ACOT11Q8WXI4 607 aaPredicted RBP6.69□□□□□ -1.34
CD44-228ENST00000528455 SH3YL1Q96HL8 342 aaPredicted RBP6.69□□□□□ -1.34
CD44-228ENST00000528455 ZNF597Q96LX8 424 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 PRSS27Q9BQR3 290 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 FUZQ9BT04 418 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 SLC19A3Q9BZV2 496 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 UBQLN3Q9H347 655 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 ACKR4Q9NPB9 350 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 SERINC1Q9NRX5 453 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 TUBA8Q9NY65 449 aaPredicted RBP6.69□□□□□ -1.34
CD44-228ENST00000528455 TAS2R10Q9NYW0 307 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 NKX1-2Q9UD57 310 aaPredicted RBP6.69□□□□□ -1.34
CD44-228ENST00000528455 TMCC3Q9ULS5 477 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 B3GNT3Q9Y2A9 372 aa6.69□□□□□ -1.34
CD44-228ENST00000528455 ASH1LQ9NR48 2969 aaKnown RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 A0A087WUU8 490 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 LOC100996750A0A140TA64 210 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 SH3PXD2BA1X283 911 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 ARRDC5A6NEK1 342 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 B4DXG7 233 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 H0Y3Z8 333 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 H0YJX3 145 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 PYCARD-AS1I3L0S3 204 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 ZNF208O43345 1280 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 GLSO94925 669 aaPredicted RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 DIRAS1O95057 198 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 LYPD3O95274 346 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 HPXP02790 462 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 MT-ND1P03886 318 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 HPNP05981 417 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 RFPL3SP0C7P2 107 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 ANXA8P13928 327 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 FPR1P21462 350 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 CHMP24386 653 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 TACR3P29371 465 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 POLR2HP52434 150 aaKnown RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 PPIAP62937 165 aaKnown RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 TLE1Q04724 770 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 PRKCDQ05655 676 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 COX10Q12887 443 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 KLRB1Q12918 225 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 ZNF169Q14929 603 aaPredicted RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 TOMM34Q15785 309 aaPredicted RBP6.68□□□□□ -1.34
CD44-228ENST00000528455 TMEM44Q2T9K0 475 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 PLPPR5Q32ZL2 321 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 NDUFAF6Q330K2 333 aa6.68□□□□□ -1.34
CD44-228ENST00000528455 PLEKHN1Q494U1 663 aaPredicted RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms