RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 MPGP29372 298 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 KHKP50053 298 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 PDLIM4P50479 330 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 POLR2HP52434 150 aaKnown RBP20.58■□□□□ 0.89
CPSF1-202ENST00000527827 PRPS1P60891 318 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 GGTLC2Q14390 218 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 GPAT3Q53EU6 434 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 C1QTNF12Q5T7M4 302 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 ZIC4Q8N9L1 334 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 PMM1Q92871 262 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 TMEM45BQ96B21 275 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 DDIT4LQ96D03 193 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 PPP1R36Q96LQ0 422 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 ZIM3Q96PE6 472 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 DPY30Q9C005 99 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 LGALS13Q9UHV8 139 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 HMGN4O00479 90 aa20.57■□□□□ 0.88
CPSF1-202ENST00000527827 NUDT17P0C025 328 aa20.57■□□□□ 0.88
CPSF1-202ENST00000527827 NR4A2P43354 598 aa20.57■□□□□ 0.88
CPSF1-202ENST00000527827 CASP8Q14790 479 aa20.57■□□□□ 0.88
CPSF1-202ENST00000527827 PDCD2Q16342 344 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-202ENST00000527827 FAM166AQ6J272 317 aa20.57■□□□□ 0.88
CPSF1-202ENST00000527827 PAQR6Q6TCH4 344 aa20.57■□□□□ 0.88
CPSF1-202ENST00000527827 MSI2Q96DH6 328 aaKnown RBP20.57■□□□□ 0.88
CPSF1-202ENST00000527827 CHODLQ9H9P2 273 aa20.57■□□□□ 0.88
CPSF1-202ENST00000527827 MARCOQ9UEW3 520 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-202ENST00000527827 KCNS2Q9ULS6 477 aa20.57■□□□□ 0.88
CPSF1-202ENST00000527827 LOC100289279A0A1B0GTE1 492 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 NDUFS8O00217 210 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 ITM2AO43736 263 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 WNT11O96014 354 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 ETV4P43268 484 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 HIKESHIQ53FT3 197 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 FAM120AOSQ5T036 256 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 ANXA8L1Q5VT79 327 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 CMIPQ8IY22 773 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 ANKFN1Q8N957 763 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 TESCQ96BS2 214 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 BOD1Q96IK1 185 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 ZNF385AQ96PM9 386 aaKnown RBP20.56■□□□□ 0.88
CPSF1-202ENST00000527827 SLC35A5Q9BS91 424 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 PIMREGQ9BSJ6 248 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 SLC38A1Q9H2H9 487 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 FKBP7Q9Y680 259 aa20.56■□□□□ 0.88
CPSF1-202ENST00000527827 IGHV4-61A0A0C4DH41 118 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 AGAP5A6NIR3 686 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 FAAHO00519 579 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 KLF11O14901 512 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 C8BP07358 591 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 CDH2P19022 906 aaPredicted RBP20.55■□□□□ 0.88
CPSF1-202ENST00000527827 SLC1A3P43003 542 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 HPCAP84074 193 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 SYPL1Q16563 259 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 SPANXN4Q5MJ08 99 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 OTUD3Q5T2D3 398 aaPredicted RBP20.55■□□□□ 0.88
CPSF1-202ENST00000527827 KLHL24Q6TFL4 600 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 TMEM99Q8N816 258 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 ZNF781Q8N8C0 355 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 VPS37AQ8NEZ2 397 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 OR9K2Q8NGE7 335 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 FOXN4Q96NZ1 517 aa20.55■□□□□ 0.88
CPSF1-202ENST00000527827 IGHV1-18A0A0C4DH31 117 aa20.54■□□□□ 0.88
CPSF1-202ENST00000527827 CHRM4P08173 479 aa20.54■□□□□ 0.88
CPSF1-202ENST00000527827 APEHP13798 732 aaKnown RBP20.54■□□□□ 0.88
CPSF1-202ENST00000527827 CHI3L1P36222 383 aaPredicted RBP20.54■□□□□ 0.88
CPSF1-202ENST00000527827 MAP2K6P52564 334 aa20.54■□□□□ 0.88
CPSF1-202ENST00000527827 EPS8Q12929 822 aa20.54■□□□□ 0.88
CPSF1-202ENST00000527827 AAED1Q7RTV5 226 aa20.54■□□□□ 0.88
CPSF1-202ENST00000527827 ANKS4BQ8N8V4 417 aa20.54■□□□□ 0.88
CPSF1-202ENST00000527827 POMGNT2Q8NAT1 580 aa20.54■□□□□ 0.88
CPSF1-202ENST00000527827 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.54■□□□□ 0.881e-8■□□□□ 8.1
CPSF1-202ENST00000527827 C3orf49Q96BT1 292 aa20.54■□□□□ 0.88
CPSF1-202ENST00000527827 TRNT1Q96Q11 434 aaKnown RBP20.54■□□□□ 0.88
CPSF1-202ENST00000527827 SF3B5Q9BWJ5 86 aaKnown RBP20.54■□□□□ 0.88
CPSF1-202ENST00000527827 ADAM19Q9H013 955 aa20.54■□□□□ 0.88
CPSF1-202ENST00000527827 LIPT2A6NK58 231 aa20.53■□□□□ 0.88
CPSF1-202ENST00000527827 TYROBPO43914 113 aa20.53■□□□□ 0.88
CPSF1-202ENST00000527827 AKR7A3O95154 331 aa20.53■□□□□ 0.88
CPSF1-202ENST00000527827 RPS4Y1P22090 263 aaKnown RBP20.53■□□□□ 0.88
CPSF1-202ENST00000527827 SNRPD2P62316 118 aaKnown RBP20.53■□□□□ 0.88
CPSF1-202ENST00000527827 CEACAM7Q14002 265 aa20.53■□□□□ 0.88
CPSF1-202ENST00000527827 RNF130Q86XS8 419 aa20.53■□□□□ 0.88
CPSF1-202ENST00000527827 WDR60Q8WVS4 1066 aa20.53■□□□□ 0.88
CPSF1-202ENST00000527827 AURKBQ96GD4 344 aaPredicted RBP20.53■□□□□ 0.88
CPSF1-202ENST00000527827 PKNOX2Q96KN3 472 aa20.53■□□□□ 0.88
CPSF1-202ENST00000527827 OBP2BQ9NPH6 170 aa20.53■□□□□ 0.88
CPSF1-202ENST00000527827 LOC390937A0A1W2PQ73 354 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 AQP7P3A6NL99 342 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 GPIP06744 558 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 SERPINF1P36955 418 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 OR7A5Q15622 319 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 TBRG1Q3YBR2 411 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 MRPL2Q5T653 305 aaKnown RBP20.52■□□□□ 0.88
CPSF1-202ENST00000527827 LRRC74BQ6ZQY2 392 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 NUDCD3Q8IVD9 361 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 OR1K1Q8NGR3 316 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 CCDC115Q96NT0 180 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 SLC38A2Q96QD8 506 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 C20orf27Q9GZN8 174 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 PIF1Q9H611 641 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms