RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 WFDC8Q8IUA0 241 aa18.26■□□□□ 0.51
VPS28-206ENST00000526734 SLC30A8Q8IWU4 369 aa18.26■□□□□ 0.51
VPS28-206ENST00000526734 C11orf65Q8NCR3 313 aa18.26■□□□□ 0.51
VPS28-206ENST00000526734 PIGTQ969N2 578 aa18.26■□□□□ 0.51
VPS28-206ENST00000526734 ANKRD27Q96NW4 1050 aa18.26■□□□□ 0.51
VPS28-206ENST00000526734 CGREF1Q99674 301 aa18.26■□□□□ 0.51
VPS28-206ENST00000526734 MED4Q9NPJ6 270 aa18.26■□□□□ 0.51
VPS28-206ENST00000526734 ZNF446Q9NWS9 450 aa18.26■□□□□ 0.51
VPS28-206ENST00000526734 RPS6KB2Q9UBS0 482 aa18.26■□□□□ 0.51
VPS28-206ENST00000526734 ZC3H12DA2A288 527 aaKnown RBP18.25■□□□□ 0.51
VPS28-206ENST00000526734 TMEM229AB2RXF0 380 aa18.25■□□□□ 0.51
VPS28-206ENST00000526734 MRPL33O75394 65 aaKnown RBP18.25■□□□□ 0.51
VPS28-206ENST00000526734 PRG2P13727 222 aa18.25■□□□□ 0.51
VPS28-206ENST00000526734 NFYCQ13952 458 aa18.25■□□□□ 0.51
VPS28-206ENST00000526734 ACKR1Q16570 336 aa18.25■□□□□ 0.51
VPS28-206ENST00000526734 C6orf89Q6UWU4 347 aa18.25■□□□□ 0.51
VPS28-206ENST00000526734 LSMEM1Q8N8F7 131 aa18.25■□□□□ 0.51
VPS28-206ENST00000526734 TRIM2Q9C040 744 aa18.25■□□□□ 0.51
VPS28-206ENST00000526734 IKZF5Q9H5V7 419 aa18.25■□□□□ 0.51
VPS28-206ENST00000526734 MALT1Q9UDY8 824 aa18.25■□□□□ 0.51
VPS28-206ENST00000526734 TESQ9UGI8 421 aaKnown RBP18.25■□□□□ 0.51
VPS28-206ENST00000526734 PRSS50Q9UI38 385 aa18.25■□□□□ 0.51
VPS28-206ENST00000526734 SLC13A4Q9UKG4 626 aa18.25■□□□□ 0.51
VPS28-206ENST00000526734 HRNRQ86YZ3 2850 aaPredicted RBP18.25■□□□□ 0.51
VPS28-206ENST00000526734 AQP7P3A6NL99 342 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 TMCC2O75069 709 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 NPIPB7O75200 414 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 VAMP5O95183 116 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 AHSA1O95433 338 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 ARFIP2P53365 341 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 NCALDP61601 193 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 SLC17A1Q14916 467 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 MAPRE2Q15555 327 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 CYP51A1Q16850 503 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 COQ5Q5HYK3 327 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 OTUD3Q5T2D3 398 aaPredicted RBP18.24■□□□□ 0.51
VPS28-206ENST00000526734 C1QTNF12Q5T7M4 302 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 C1orf140Q5VVS0 124 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 ZNF704Q6ZNC4 412 aaPredicted RBP18.24■□□□□ 0.51
VPS28-206ENST00000526734 CCDC103Q8IW40 242 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 C10orf111Q8N326 155 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 DNAJA4Q8WW22 397 aaPredicted RBP18.24■□□□□ 0.51
VPS28-206ENST00000526734 TMEM45BQ96B21 275 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 ZNF775Q96BV0 537 aaPredicted RBP18.24■□□□□ 0.51
VPS28-206ENST00000526734 HS3ST6Q96QI5 342 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 TMEM204Q9BSN7 226 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 CCDC134Q9H6E4 229 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 FLVCR1Q9Y5Y0 555 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 AKAP9Q99996 3911 aa18.24■□□□□ 0.51
VPS28-206ENST00000526734 FRS3O43559 492 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 PNMTP11086 282 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 GGT1P19440 569 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 ADSLP30566 484 aaPredicted RBP18.23■□□□□ 0.51
VPS28-206ENST00000526734 CEACAM7Q14002 265 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 OR7A5Q15622 319 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 TAB1Q15750 504 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 ADRM1Q16186 407 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 TIMM23BQ5SRD1 257 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 NET1Q7Z628 596 aaPredicted RBP18.23■□□□□ 0.51
VPS28-206ENST00000526734 RETREG3Q86VR2 466 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 TGIF2LYQ8IUE0 185 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 ARMC8Q8IUR7 673 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 UBE2J2Q8N2K1 259 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 MUCL1Q96DR8 90 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 PLPPR2Q96GM1 343 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 SH3GL1Q99961 368 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 ESRP2Q9H6T0 727 aaKnown RBP18.23■□□□□ 0.51
VPS28-206ENST00000526734 UBTD1Q9HAC8 227 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 FGFR1OP2Q9NVK5 253 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 ASB6Q9NWX5 421 aa18.23■□□□□ 0.51
VPS28-206ENST00000526734 ELOA3DA6NLF2 546 aaPredicted RBP18.22■□□□□ 0.51
VPS28-206ENST00000526734 BBIP1A8MTZ0 92 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 LYZL6O75951 148 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 NPPAP01160 153 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 VIMP08670 466 aaKnown RBP18.22■□□□□ 0.51
VPS28-206ENST00000526734 IGHV1-2P23083 117 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 PCBP3P57721 371 aaKnown RBP18.22■□□□□ 0.51
VPS28-206ENST00000526734 CYLC2Q14093 348 aaPredicted RBP18.22■□□□□ 0.51
VPS28-206ENST00000526734 TRMT5Q32P41 509 aaKnown RBP18.22■□□□□ 0.51
VPS28-206ENST00000526734 ELOA3BQ3SY89 546 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 FAM91A1Q658Y4 838 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 CASP12Q6UXS9 341 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 LRRC75A-AS1Q8N1F1 130 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 ELOA3Q8NG57 546 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 MFSD8Q8NHS3 518 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 DNAJA3Q96EY1 480 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 TAS2R16Q9NYV7 291 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 SELENONQ9NZV5 590 aa18.22■□□□□ 0.51
VPS28-206ENST00000526734 OR2T1O43869 369 aa18.21■□□□□ 0.51
VPS28-206ENST00000526734 RAMP1O60894 148 aa18.21■□□□□ 0.51
VPS28-206ENST00000526734 FZD7O75084 574 aa18.21■□□□□ 0.51
VPS28-206ENST00000526734 GTF2E2P29084 291 aaKnown RBP18.21■□□□□ 0.51
VPS28-206ENST00000526734 RGS8P57771 180 aaPredicted RBP18.21■□□□□ 0.51
VPS28-206ENST00000526734 TSC22D1Q15714 1073 aa18.21■□□□□ 0.51
VPS28-206ENST00000526734 INTS11Q5TA45 600 aaKnown RBP18.21■□□□□ 0.51
VPS28-206ENST00000526734 OR7E24Q6IFN5 339 aa18.21■□□□□ 0.51
VPS28-206ENST00000526734 ADAM5Q6NVV9 412 aa18.21■□□□□ 0.51
VPS28-206ENST00000526734 ULK3Q6PHR2 472 aa18.21■□□□□ 0.51
VPS28-206ENST00000526734 PATL1Q86TB9 770 aaKnown RBP18.21■□□□□ 0.51
VPS28-206ENST00000526734 RANBP3LQ86VV4 465 aaPredicted RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms