RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 GPRIN2O60269 458 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 APEHP13798 732 aaKnown RBP11.77□□□□□ -0.53
USP53-209ENST00000514665 FPR3P25089 353 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 HTR1FP30939 366 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 PRKAR1BP31321 381 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 SF3B4Q15427 424 aaKnown RBP eCLIP11.77□□□□□ -0.53
USP53-209ENST00000514665 FCN2Q15485 313 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 PYCR3Q53H96 274 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 BEX5Q5H9J7 111 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 SLC6A19Q695T7 634 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 SLC35F3Q8IY50 421 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 GIMAP1Q8WWP7 306 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 PATE1Q8WXA2 126 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 BORCS8Q96FH0 119 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 FYTTD1Q96QD9 318 aaKnown RBP11.77□□□□□ -0.53
USP53-209ENST00000514665 PDCD1LG2Q9BQ51 273 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 ST6GALNAC5Q9BVH7 336 aa11.77□□□□□ -0.53
USP53-209ENST00000514665 ZC3H12DA2A288 527 aaKnown RBP11.76□□□□□ -0.53
USP53-209ENST00000514665 AGPAT2O15120 278 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 FABP7O15540 132 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 TACR3P29371 465 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 OTX2P32243 289 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 PER3P56645 1201 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 FXYD4P59646 89 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 CDK10Q15131 360 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 TBC1D25Q3MII6 688 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 OR5H6Q8NGV6 325 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 MS4A6EQ96DS6 147 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 ELF4Q99607 663 aaPredicted RBP11.76□□□□□ -0.53
USP53-209ENST00000514665 PKMYT1Q99640 499 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 NXF5Q9H1B4 397 aaKnown RBP11.76□□□□□ -0.53
USP53-209ENST00000514665 APMAPQ9HDC9 416 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 SAGE1Q9NXZ1 904 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 LRIT1Q9P2V4 623 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 THAP10Q9P2Z0 257 aaPredicted RBP11.76□□□□□ -0.53
USP53-209ENST00000514665 GOLGB1Q14789 3259 aaKnown RBP11.76□□□□□ -0.53
USP53-209ENST00000514665 LINC01553A4QN01 128 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 HTR3BO95264 441 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 LCATP04180 440 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 AKAIN1P0CW23 69 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 S100A2P29034 98 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 CCR2P41597 374 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 SNRPGP62308 76 aaKnown RBP11.76□□□□□ -0.53
USP53-209ENST00000514665 GNMTQ14749 295 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 FAM69AQ5T7M9 428 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 LRRC69Q6ZNQ3 347 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 GPR137CQ8N3F9 429 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 GON7Q9BXV9 100 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 EIF5A2Q9GZV4 153 aaKnown RBP11.76□□□□□ -0.53
USP53-209ENST00000514665 TBC1D29Q9UFV1 150 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 LOXHD1Q8IVV2 1947 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 STRCQ7RTU9 1775 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 SSX5O60225 188 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 SNAPC5O75971 98 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 LGI1O95970 557 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 CSF1P09603 554 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 TGM4P49221 684 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 TSC22D1Q15714 1073 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 TSSK4Q6SA08 328 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 METAP1DQ6UB28 335 aaPredicted RBP11.76□□□□□ -0.53
USP53-209ENST00000514665 C3P1Q6ZMU1 363 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 GDPD3Q7L5L3 318 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 NANOGP1Q8N7R0 232 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 ZNF611Q8N823 705 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 OR4M1Q8NGD0 313 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 OR51Q1Q8NH59 317 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 DUSP19Q8WTR2 217 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 KCTD12Q96CX2 325 aaKnown RBP11.76□□□□□ -0.53
USP53-209ENST00000514665 DDIT4LQ96D03 193 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 Q96M85 177 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 MYADMQ96S97 322 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 HCAR1Q9BXC0 346 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 NRSN2Q9GZP1 204 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 SPNS1Q9H2V7 528 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 NOX4Q9NPH5 578 aa11.76□□□□□ -0.53
USP53-209ENST00000514665 HINT3Q9NQE9 182 aaKnown RBP11.76□□□□□ -0.53
USP53-209ENST00000514665 USP54Q70EL1 1684 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 OR2T7P0C7T2 308 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 PSMB1P20618 241 aaKnown RBP11.75□□□□□ -0.53
USP53-209ENST00000514665 EPHA5P54756 1037 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 RRAS2P62070 204 aaPredicted RBP11.75□□□□□ -0.53
USP53-209ENST00000514665 RSU1Q15404 277 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 ZNF77Q15935 545 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 LIMS2Q7Z4I7 341 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 ACBD4Q8NC06 268 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 OR2T27Q8NH04 317 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 OR56B4Q8NH76 319 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 PHB2Q99623 299 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 MAP3K3Q99759 626 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 A3GALT2U3KPV4 340 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 TRDV1A0A1B0GX56 115 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 SULT2B1O00204 365 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 SLC2A10O95528 541 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 PRR35P0CG20 571 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 CD38P28907 300 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 CCR6P51684 374 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 SRYQ05066 204 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 EFR3AQ14156 821 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 LPAL2Q16609 132 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 TMEM52BQ4KMG9 183 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms