RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CALCRP30988 508 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 CRYBB2P43320 205 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 ATP5OP48047 213 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 PRRX1P54821 245 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 PLP1P60201 277 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 CCDC173Q0VFZ6 552 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 ASPHQ12797 758 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 RCN1Q15293 331 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 LRRC36Q1X8D7 754 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 BCL7AQ4VC05 210 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 MARC1Q5VT66 337 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 PAMR1Q6UXH9 720 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 ACOT7LQ6ZUV0 252 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 ZNF677Q86XU0 584 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 FGGYQ96C11 551 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 NUS1Q96E22 293 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 OXGR1Q96P68 337 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 MAPKAP1Q9BPZ7 522 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 FAM192AQ9GZU8 254 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 Q9H3A6 140 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 RAB20Q9NX57 234 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 IKZF2Q9UKS7 526 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 TMCO1Q9UM00 188 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 KCNIP3Q9Y2W7 256 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 TMED5Q9Y3A6 229 aa5.51□□□□□ -1.53
NUP54-215ENST00000514313 RPL36Q9Y3U8 105 aaKnown RBP5.51□□□□□ -1.53
NUP54-215ENST00000514313 TUBAL3A6NHL2 446 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 HIP1O00291 1037 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 DNALI1O14645 258 aaPredicted RBP5.5□□□□□ -1.53
NUP54-215ENST00000514313 GAS8-AS1O95177 125 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 CRYGBP07316 175 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 GIG44P09565 113 aaPredicted RBP5.5□□□□□ -1.53
NUP54-215ENST00000514313 DDOSTP39656 456 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 PLK1P53350 603 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 OXA1LQ15070 435 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 NSUN5P1Q3KNT7 163 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 DNM1P46Q6ZS02 220 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 C19orf35Q6ZS72 473 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 PSTKQ8IV42 348 aaKnown RBP5.5□□□□□ -1.53
NUP54-215ENST00000514313 FGF11Q92914 225 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 TM4SF19Q96DZ7 209 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 SEC22AQ96IW7 307 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 PLEKHA8Q96JA3 519 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 FOXN4Q96NZ1 517 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 CNN2Q99439 309 aaKnown RBP5.5□□□□□ -1.53
NUP54-215ENST00000514313 DEFB126Q9BYW3 111 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 NARFLQ9H6Q4 476 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 ABCD2Q9UBJ2 740 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 Q9UF83 564 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 KLHL21Q9UJP4 597 aa5.5□□□□□ -1.53
NUP54-215ENST00000514313 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.5□□□□□ -1.53
NUP54-215ENST00000514313 FRMPD3Q5JV73 1810 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 OR2AG2A6NM03 316 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 RNF13O43567 381 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 UGT1A9O60656 530 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 TMEM50AO95807 157 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 MMP1P03956 469 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 ARL6IP1Q15041 203 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 ZNF77Q15935 545 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 TMEM107Q6UX40 140 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 LRRC31Q6UY01 552 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 HSDL2Q6YN16 418 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 MOB1BQ7L9L4 216 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 ARCQ7LC44 396 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 OR4K14Q8NGD5 310 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 CSDC2Q9Y534 153 aaKnown RBP5.49□□□□□ -1.53
NUP54-215ENST00000514313 PLEKHH1Q9ULM0 1364 aa5.49□□□□□ -1.53
NUP54-215ENST00000514313 IGKV1D-8A0A087WSZ0 117 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 IGHV7-81A0A0B4J1V7 117 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 A0A0G2JRQ6 117 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 MBTPS2O43462 519 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 BCL2L11O43521 198 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 TBL1XO60907 577 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 P04436 131 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 MCF2P10911 925 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 NTSP30990 170 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 MEOX2P50222 304 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 PPIL2Q13356 520 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 OR5I1Q13606 314 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 KLF17Q5JT82 389 aaPredicted RBP5.48□□□□□ -1.53
NUP54-215ENST00000514313 LRRC66Q68CR7 880 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 APOBEC3FQ8IUX4 373 aaKnown RBP5.48□□□□□ -1.53
NUP54-215ENST00000514313 NUDCD3Q8IVD9 361 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 CHCHD10Q8WYQ3 142 aaPredicted RBP5.48□□□□□ -1.53
NUP54-215ENST00000514313 IFT74Q96LB3 600 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 KCNA7Q96RP8 456 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 ZNF184Q99676 751 aaPredicted RBP5.48□□□□□ -1.53
NUP54-215ENST00000514313 MRPL45Q9BRJ2 306 aaKnown RBP5.48□□□□□ -1.53
NUP54-215ENST00000514313 NIPAL2Q9H841 368 aa5.48□□□□□ -1.53
NUP54-215ENST00000514313 LYPLA1O75608 230 aaPredicted RBP5.47□□□□□ -1.53
NUP54-215ENST00000514313 AGTP01019 485 aa5.47□□□□□ -1.53
NUP54-215ENST00000514313 TROVE2P10155 538 aaKnown RBP eCLIP5.47□□□□□ -1.53
NUP54-215ENST00000514313 GALP22466 123 aa5.47□□□□□ -1.53
NUP54-215ENST00000514313 CHMLP26374 656 aa5.47□□□□□ -1.53
NUP54-215ENST00000514313 SHMT2P34897 504 aa5.47□□□□□ -1.53
NUP54-215ENST00000514313 OR3A4PP47883 348 aa5.47□□□□□ -1.53
NUP54-215ENST00000514313 GSSP48637 474 aa5.47□□□□□ -1.53
NUP54-215ENST00000514313 EGFEM1PQ0D2K5 195 aa5.47□□□□□ -1.53
NUP54-215ENST00000514313 SCRN3Q0VDG4 424 aa5.47□□□□□ -1.53
NUP54-215ENST00000514313 PPP1R7Q15435 360 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms