RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 SHISA2Q6UWI4 295 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 TREML4Q6UXN2 200 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 CASP12Q6UXS9 341 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 C1orf229Q6ZS94 237 aaPredicted RBP14.27□□□□□ -0.13
VIM-208ENST00000497849 TRIM46Q7Z4K8 759 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 ZNF614Q8N883 585 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 UBASH3BQ8TF42 649 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 ST8SIA1Q92185 356 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 CHMP6Q96FZ7 201 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 SLC38A2Q96QD8 506 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 DOK1Q99704 481 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 KATNB1Q9BVA0 655 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 LPAR2Q9HBW0 351 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 SERINC1Q9NRX5 453 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 SIRT3Q9NTG7 399 aaPredicted RBP14.27□□□□□ -0.13
VIM-208ENST00000497849 ZDHHC2Q9UIJ5 367 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 USP22Q9UPT9 525 aa14.27□□□□□ -0.13
VIM-208ENST00000497849 NUP214P35658 2090 aaPredicted RBP14.27□□□□□ -0.13
VIM-208ENST00000497849 TBX19O60806 448 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 RSL1D1O76021 490 aaKnown RBP14.26□□□□□ -0.13
VIM-208ENST00000497849 PMS2P2O95744 297 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 CRYAAP02489 173 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 UBL4AP11441 157 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 EPHA1P21709 976 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 MPGP29372 298 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 SLC1A6P48664 564 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 CBX1P83916 185 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 SKP2Q13309 424 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 IMPG1Q17R60 797 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 LSRQ86X29 649 aaPredicted RBP14.26□□□□□ -0.13
VIM-208ENST00000497849 SLC25A43Q8WUT9 341 aaPredicted RBP14.26□□□□□ -0.13
VIM-208ENST00000497849 DYDC1Q8WWB3 177 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 PPCDCQ96CD2 204 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 ZHX1-C8orf76Q96EF9 292 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 BOD1Q96IK1 185 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 JMJD8Q96S16 334 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 SORT1Q99523 831 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 ESM1Q9NQ30 184 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 ACSS1Q9NUB1 689 aaPredicted RBP14.26□□□□□ -0.13
VIM-208ENST00000497849 ZCCHC3Q9NUD5 404 aaKnown RBP14.26□□□□□ -0.13
VIM-208ENST00000497849 PNPOQ9NVS9 261 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 STK38LQ9Y2H1 464 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 CCL27Q9Y4X3 112 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 FLVCR1Q9Y5Y0 555 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 PTGDR2Q9Y5Y4 395 aa14.26□□□□□ -0.13
VIM-208ENST00000497849 TMEM129A0AVI4 362 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 TMEM114B3SHH9 223 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 hCG_2039718K7EN88 272 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 AKAP10O43572 662 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 CRCPO75575 148 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 AVPP01185 164 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 MSMBP08118 114 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 TFPIP10646 304 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 CDH2P19022 906 aaPredicted RBP14.25□□□□□ -0.13
VIM-208ENST00000497849 CALCRP30988 508 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 MAGEA8P43361 318 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 ASMTP46597 345 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 H3F3AP84243 136 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 NAAAQ02083 359 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 GUCY1A3Q02108 690 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 PDE7AQ13946 482 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 KLHL24Q6TFL4 600 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 CARM1Q86X55 608 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 LRRC17Q8N6Y2 441 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 ZDHHC22Q8N966 263 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 CLDND2Q8NHS1 167 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 LRRC37BQ96QE4 947 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 KCNS3Q9BQ31 491 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 LAT2Q9GZY6 243 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 REEP4Q9H6H4 257 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 SEC61A2Q9H9S3 476 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 ACER3Q9NUN7 267 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 SH3BP4Q9P0V3 963 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 FBXO9Q9UK97 447 aaPredicted RBP14.25□□□□□ -0.13
VIM-208ENST00000497849 GRIP1Q9Y3R0 1128 aa14.25□□□□□ -0.13
VIM-208ENST00000497849 AZIN1O14977 448 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 DNPH1O43598 174 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 ERCC1P07992 297 aaPredicted RBP14.24□□□□□ -0.13
VIM-208ENST00000497849 DDX5P17844 614 aaKnown RBP14.24□□□□□ -0.13
VIM-208ENST00000497849 SLC1A3P43003 542 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 NAA20P61599 178 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 HGFACQ04756 655 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 ADRM1Q16186 407 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 PDZK1Q5T2W1 519 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 ANKRD16Q6P6B7 361 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 ZNF781Q8N8C0 355 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 CKAP2Q8WWK9 683 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 MRPL24Q96A35 216 aaKnown RBP14.24□□□□□ -0.13
VIM-208ENST00000497849 CCDC106Q9BWC9 280 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 OR11A1Q9GZK7 315 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 RACGAP1Q9H0H5 632 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 OBP2BQ9NPH6 170 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 CTPS2Q9NRF8 586 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 PARPBPQ9NWS1 579 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 CRNNQ9UBG3 495 aaPredicted RBP14.24□□□□□ -0.13
VIM-208ENST00000497849 KCNE5Q9UJ90 142 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 SLC9A8Q9Y2E8 581 aa14.24□□□□□ -0.13
VIM-208ENST00000497849 LOC105371242A0A075B767 164 aa14.23□□□□□ -0.13
VIM-208ENST00000497849 CENPVL1A0A0U1RR11 272 aa14.23□□□□□ -0.13
VIM-208ENST00000497849 SH3PXD2BA1X283 911 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms