RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 PRAMEF7Q5VXH5 474 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 OR7E24Q6IFN5 339 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 PAQR6Q6TCH4 344 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 ZNF836Q6ZNA1 936 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 CIARTQ8N365 385 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-214ENST00000496043 CLIP4Q8N3C7 705 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 CADM2Q8N3J6 435 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 AURKBQ96GD4 344 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-214ENST00000496043 TMEM19Q96HH6 336 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 RADILQ96JH8 1075 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 COX4I2Q96KJ9 171 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 MUS81Q96NY9 551 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 TAPBPLQ9BX59 468 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 PAIP1Q9H074 479 aaKnown RBP11.24□□□□□ -0.61
PTPRF-214ENST00000496043 TCF7L2Q9NQB0 619 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 TAS2R16Q9NYV7 291 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 CISD1Q9NZ45 108 aaKnown RBP11.24□□□□□ -0.61
PTPRF-214ENST00000496043 UPB1Q9UBR1 384 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 MGAT4BQ9UQ53 548 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 ZNF443Q9Y2A4 671 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-214ENST00000496043 SLC9A8Q9Y2E8 581 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 DSPPQ9NZW4 1301 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 PRR14LQ5THK1 2151 aa11.24□□□□□ -0.61
PTPRF-214ENST00000496043 ZNF469Q96JG9 3925 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-214ENST00000496043 A0A096LPI6 279 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 A0A1W2PP18 115 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 ZC3H12DA2A288 527 aaKnown RBP11.23□□□□□ -0.61
PTPRF-214ENST00000496043 TRIM64A6NGJ6 449 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 TRIM64BA6NI03 449 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 LIPT2A6NK58 231 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 A8MVM7 634 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 OVOL3O00110 214 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 RAD51DO75771 328 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 HEXAP06865 529 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 IDH3AP50213 366 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 FADDQ13158 208 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 OR7A5Q15622 319 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 RPS26P11Q5JNZ5 115 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-214ENST00000496043 OTUD3Q5T2D3 398 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-214ENST00000496043 TMEM225Q6GV28 225 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 SLC2A7Q6PXP3 512 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 BLOC1S3Q6QNY0 202 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 KLHL17Q6TDP4 642 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 SEZ6L2Q6UXD5 910 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 TMEM108Q6UXF1 575 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 CASP12Q6UXS9 341 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 ATG4DQ86TL0 474 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-214ENST00000496043 GOLGA6L1Q8N7Z2 621 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 NEUROG1Q92886 237 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 GTPBP3Q969Y2 492 aaKnown RBP11.23□□□□□ -0.61
PTPRF-214ENST00000496043 ATP6V1G3Q96LB4 118 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 CCDC28BQ9BUN5 200 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 SF3B5Q9BWJ5 86 aaKnown RBP11.23□□□□□ -0.61
PTPRF-214ENST00000496043 TRIM2Q9C040 744 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 PIF1Q9H611 641 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 BCL2L10Q9HD36 194 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 A4GALTQ9NPC4 353 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 FLVCR1Q9Y5Y0 555 aa11.23□□□□□ -0.61
PTPRF-214ENST00000496043 C5orf58C9J3I9 102 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 AKR7A3O95154 331 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 SOD3P08294 240 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 NUDT7P0C024 238 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 BMP2P12643 396 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 PRG2P13727 222 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 PTAFRP25105 342 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 IRX1P78414 480 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-214ENST00000496043 TGFBR3Q03167 851 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 BNIP2Q12982 314 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 GABRA6Q16445 453 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 FUNDC1Q8IVP5 155 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 DEPDC4Q8N2C3 294 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 TMEM99Q8N816 258 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 KBTBD8Q8NFY9 601 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 OR52E4Q8NGH9 312 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 OR52N5Q8NH56 324 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 BBS10Q8TAM1 723 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 STK35Q8TDR2 534 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 DYDC1Q8WWB3 177 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 SLC35B4Q969S0 331 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 ALG2Q9H553 416 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 SLCO1B3Q9NPD5 702 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 FAIMQ9NVQ4 179 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 TMEM45AQ9NWC5 275 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 MALT1Q9UDY8 824 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 DCTN4Q9UJW0 460 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 SLC25A15Q9Y619 301 aa11.22□□□□□ -0.61
PTPRF-214ENST00000496043 RAI1Q7Z5J4 1906 aaPredicted RBP11.21□□□□□ -0.61
PTPRF-214ENST00000496043 FLNAP21333 2647 aaKnown RBP11.21□□□□□ -0.61
PTPRF-214ENST00000496043 AQP7P3A6NL99 342 aa11.21□□□□□ -0.61
PTPRF-214ENST00000496043 SHISA9B4DS77 424 aa11.21□□□□□ -0.61
PTPRF-214ENST00000496043 ABCD4O14678 606 aa11.21□□□□□ -0.61
PTPRF-214ENST00000496043 VAMP5O95183 116 aa11.21□□□□□ -0.61
PTPRF-214ENST00000496043 PPIBP23284 216 aaKnown RBP11.21□□□□□ -0.61
PTPRF-214ENST00000496043 ZNF83P51522 516 aa11.21□□□□□ -0.61
PTPRF-214ENST00000496043 AQP5P55064 265 aa11.21□□□□□ -0.61
PTPRF-214ENST00000496043 FOXG1P55316 489 aaPredicted RBP11.21□□□□□ -0.61
PTPRF-214ENST00000496043 ETFDHQ16134 617 aa11.21□□□□□ -0.61
PTPRF-214ENST00000496043 PGGHGQ32M88 737 aa11.21□□□□□ -0.61
PTPRF-214ENST00000496043 LRIF1Q5T3J3 769 aa11.21□□□□□ -0.61
PTPRF-214ENST00000496043 C1QTNF12Q5T7M4 302 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms