RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	GNAZ	P19086	355 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	MYF6	P23409	242 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	IVD	P26440	423 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	CCKAR	P32238	428 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	DNASE1L1	P49184	302 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	FNTA	P49354	379 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	ASCL1	P50553	236 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	CDH12	P55289	794 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	LIM2	P55344	173 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	HSD17B7	P56937	341 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	PPIA	P62937	165 aa	Known RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	CDKL1	Q00532	357 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	PLP2	Q04941	152 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	CRYZ	Q08257	329 aa	Known RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	DMTN	Q08495	405 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	KEAP1	Q14145	624 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	FASTKD3	Q14CZ7	662 aa	Known RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	TSN	Q15631	228 aa	Known RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	ZKSCAN8	Q15776	578 aa	Predicted RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	ZNF791	Q3KP31	576 aa	Predicted RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	LSM12	Q3MHD2	195 aa	Known RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	SPANXN3	Q5MJ09	141 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	DCST1	Q5T197	706 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	RIPPLY2	Q5TAB7	128 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	NDUFAF5	Q5TEU4	345 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	SHE	Q5VZ18	495 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	HEPHL1	Q6MZM0	1159 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	FAM45BP	Q6NSW5	357 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	ARSK	Q6UWY0	536 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	B3GNT6	Q6ZMB0	384 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	DGAT2L6	Q6ZPD8	337 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	RTL4	Q6ZR62	310 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	RGS9BP	Q6ZS82	235 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	ZNF627	Q7L945	461 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	CCDC190	Q86UF4	302 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	SLC22A16	Q86VW1	577 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	THOC6	Q86W42	341 aa	Known RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	ZC3HC1	Q86WB0	502 aa	Known RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	TIGD4	Q8IY51	512 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	FBXW8	Q8N3Y1	598 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	ZNF441	Q8N8Z8	693 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	BOLL	Q8N9W6	283 aa	Known RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	UXS1	Q8NBZ7	420 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	TRPV3	Q8NET8	790 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	OR2L5	Q8NG80	312 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	OR7G3	Q8NG95	312 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	OR8K3	Q8NH51	312 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	FAM45A	Q8TCE6	357 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	ZNF721	Q8TF20	911 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	ANKRD49	Q8WVL7	239 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	NTNG2	Q96CW9	530 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	WDR34	Q96EX3	536 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	MS4A14	Q96JA4	679 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	EGFL8	Q99944	293 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	FAM173A	Q9BQD7	235 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	AIF1L	Q9BQI0	150 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	INPP5K	Q9BT40	448 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	ZNF717	Q9BY31	904 aa	Predicted RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	DEFB127	Q9H1M4	99 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	RHBG	Q9H310	441 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	UBQLN3	Q9H347	655 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	EHD1	Q9H4M9	534 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	IL1RL2	Q9HB29	575 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	CHMP1A	Q9HD42	196 aa	Predicted RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	KCNJ16	Q9NPI9	418 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	PRTFDC1	Q9NRG1	225 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	HPF1	Q9NWY4	346 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	TUBA8	Q9NY65	449 aa	Predicted RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	HEY2	Q9UBP5	337 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	TMCC3	Q9ULS5	477 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	SLC22A14	Q9Y267	594 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	YARS2	Q9Y2Z4	477 aa	Known RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	OARD1	Q9Y530	152 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	MAD1L1	Q9Y6D9	718 aa		3.8	□□□□□ -1.8
VPS52-222	ENST00000495981	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	3.8	□□□□□ -1.8
VPS52-222	ENST00000495981		A0A1W2PPQ1	181 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	SERINC4	A6NH21	518 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981		J3QR06	171 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	PGRMC1	O00264	195 aa	Known RBP	3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	WWP2	O00308	870 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	CLDN4	O14493	209 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	DNALI1	O14645	258 aa	Predicted RBP	3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	WNT9B	O14905	357 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	FGF17	O60258	216 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	SELENOF	O60613	162 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	HCN1	O60741	890 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	PRKRA	O75569	313 aa	Known RBP	3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	BCAS2	O75934	225 aa	Predicted RBP	3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	ZFAND5	O76080	213 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	LRAT	O95237	230 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	TTC4	O95801	387 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	C1QA	P02745	245 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	HPD	P32754	393 aa	Predicted RBP	3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	GDF5	P43026	501 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	ZFP36L2	P47974	494 aa	Known RBP	3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	KHK	P50053	298 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	ZNF136	P52737	540 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	TAS2R39	P59534	338 aa		3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	STXBP1	P61764	594 aa	Known RBP	3.79	□□□□□ -1.8
VPS52-222	ENST00000495981	TUBA4A	P68366	448 aa		3.79	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms