RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 AQP12BA6NM10 295 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 CPSF4LA6NMK7 179 aaKnown RBP7.42□□□□□ -1.22
SF3A1-208ENST00000485618 B4DXG7 233 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 ARPC2O15144 300 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 FRS3O43559 492 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 CXCL13O43927 109 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 KRT36O76013 467 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 WISP2O76076 250 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 OPN1LWP04000 364 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 TMIGD3P0DMS9 266 aaPredicted RBP7.42□□□□□ -1.22
SF3A1-208ENST00000485618 UMPSP11172 480 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 PRG2P13727 222 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 NCK1P16333 377 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 RHCEP18577 417 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 IFNGR2P38484 337 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 PEX19P40855 299 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 DIO1P49895 249 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 AGFG1P52594 562 aaKnown RBP7.42□□□□□ -1.22
SF3A1-208ENST00000485618 ZNF136P52737 540 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 MYBPHQ13203 477 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 CEACAM7Q14002 265 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 TRAM2Q15035 370 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 SLC25A35Q3KQZ1 300 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 GLIPR1L2Q4G1C9 344 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 EMC4Q5J8M3 183 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 TMEM201Q5SNT2 666 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 TMEM225Q6GV28 225 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 C3P1Q6ZMU1 363 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 MRGPRGQ86SM5 289 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 ATG4DQ86TL0 474 aaPredicted RBP7.42□□□□□ -1.22
SF3A1-208ENST00000485618 GGNQ86UU5 652 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 AQP12AQ8IXF9 295 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 RNF113BQ8IZP6 322 aaKnown RBP7.42□□□□□ -1.22
SF3A1-208ENST00000485618 PIK3C3Q8NEB9 887 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 OR6S1Q8NH40 331 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 LILRB4Q8NHJ6 448 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 MFSD8Q8NHS3 518 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 MBD3L2Q8NHZ7 208 aaPredicted RBP7.42□□□□□ -1.22
SF3A1-208ENST00000485618 MARVELD3Q96A59 401 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 C3orf49Q96BT1 292 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 CCDC124Q96CT7 223 aaKnown RBP7.42□□□□□ -1.22
SF3A1-208ENST00000485618 SLC41A3Q96GZ6 507 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 GMPPAQ96IJ6 420 aaPredicted RBP7.42□□□□□ -1.22
SF3A1-208ENST00000485618 HSH2DQ96JZ2 352 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 RAB3IPQ96QF0 476 aaPredicted RBP7.42□□□□□ -1.22
SF3A1-208ENST00000485618 DMRTA2Q96SC8 542 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 ASPNQ9BXN1 380 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 LRMDAQ9H2I8 198 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 ANKRD19PQ9H560 264 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 MAGIXQ9H6Y5 334 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 KCNJ16Q9NPI9 418 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 PARPBPQ9NWS1 579 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 RIMS3Q9UJD0 308 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 USP22Q9UPT9 525 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 MED31Q9Y3C7 131 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 CHST2Q9Y4C5 530 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 HRH3Q9Y5N1 445 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 ENPP4Q9Y6X5 453 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 PCNX1Q96RV3 2341 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 PCNX3Q9H6A9 2034 aa7.42□□□□□ -1.22
SF3A1-208ENST00000485618 TMEM72A0PK05 275 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 GSC2O15499 205 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 HNRNPRO43390 633 aaKnown RBP7.41□□□□□ -1.22
SF3A1-208ENST00000485618 EFNA2O43921 213 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 PDE5AO76074 875 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 MT-ATP6P00846 226 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 FABP3P05413 133 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 YES1P07947 543 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 IL11P20809 199 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 FPR1P21462 350 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 CEACAM8P31997 349 aaPredicted RBP7.41□□□□□ -1.22
SF3A1-208ENST00000485618 OR1E2P47887 323 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 SUCLG1P53597 346 aaKnown RBP7.41□□□□□ -1.22
SF3A1-208ENST00000485618 CDH12P55289 794 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 GABPB1Q06547 395 aaPredicted RBP7.41□□□□□ -1.22
SF3A1-208ENST00000485618 RASGEF1BQ0VAM2 473 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 FLOT2Q14254 428 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 PDK3Q15120 406 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 DCST1Q5T197 706 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 FAM69AQ5T7M9 428 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 LCN8Q6JVE9 175 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 PAQR6Q6TCH4 344 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 FCRLAQ7L513 359 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 VTCN1Q7Z7D3 282 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 ADGRE4PQ86SQ3 457 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 LINC00471Q8N535 108 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 CNEP1R1Q8N9A8 125 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 SCAIQ8N9R8 606 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 FAM156AQ8NDB6 213 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 FNDC9Q8TBE3 224 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 SDCCAG3Q96C92 435 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 CCDC120Q96HB5 630 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 ADGRG7Q96K78 797 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 PRRC1Q96M27 445 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 PIP5K1AQ99755 562 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 SF3B5Q9BWJ5 86 aaKnown RBP7.41□□□□□ -1.22
SF3A1-208ENST00000485618 RNF122Q9H9V4 155 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 CHST11Q9NPF2 352 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 IL1RAPQ9NPH3 570 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 CLCF1Q9UBD9 225 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms