RNA–Protein interactions for RNA: ENST00000483275.1

VARS-226, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-226ENST00000483275 AMBRA1Q9C0C7 1298 aa12.15□□□□□ -0.46
VARS-226ENST00000483275 SEC61A2Q9H9S3 476 aa12.15□□□□□ -0.46
VARS-226ENST00000483275 FKRPQ9H9S5 495 aa12.15□□□□□ -0.46
VARS-226ENST00000483275 ASIC5Q9NY37 505 aa12.15□□□□□ -0.46
VARS-226ENST00000483275 MARCOQ9UEW3 520 aaPredicted RBP12.15□□□□□ -0.46
VARS-226ENST00000483275 LGALS13Q9UHV8 139 aa12.15□□□□□ -0.46
VARS-226ENST00000483275 PCDHGB4Q9UN71 923 aa12.15□□□□□ -0.46
VARS-226ENST00000483275 SLC9A8Q9Y2E8 581 aa12.15□□□□□ -0.46
VARS-226ENST00000483275 LOC100289279A0A1B0GTE1 492 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 HMGN4O00479 90 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 RGS16O15492 202 aaPredicted RBP12.14□□□□□ -0.47
VARS-226ENST00000483275 LMX1BO60663 402 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 LGI1O95970 557 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 F12P00748 615 aaPredicted RBP12.14□□□□□ -0.47
VARS-226ENST00000483275 SRD5A1P18405 259 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 CDKN2CP42773 168 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 POLR2HP52434 150 aaKnown RBP12.14□□□□□ -0.47
VARS-226ENST00000483275 SLC35A1P78382 337 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 LSM11P83369 360 aaKnown RBP eCLIP12.14□□□□□ -0.47
VARS-226ENST00000483275 CHRNB3Q05901 458 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 BNIP2Q12982 314 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 MAD2L1Q13257 205 aaPredicted RBP12.14□□□□□ -0.47
VARS-226ENST00000483275 SLC17A1Q14916 467 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 OR7A5Q15622 319 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 FAM174BQ3ZCQ3 159 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 COX20Q5RI15 118 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 FAM120AOSQ5T036 256 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 OTUD3Q5T2D3 398 aaPredicted RBP12.14□□□□□ -0.47
VARS-226ENST00000483275 VHLLQ6RSH7 139 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 SSX8Q7RTT4 187 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 SPATA19Q7Z5L4 167 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 CROCCP2Q86T23 111 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 GPAT4Q86UL3 456 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 TMEM99Q8N816 258 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 OR8J2Q8NGG1 315 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 MSI2Q96DH6 328 aaKnown RBP12.14□□□□□ -0.47
VARS-226ENST00000483275 NEURL3Q96EH8 262 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 TEX37Q96LM6 180 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 ALKBH3Q96Q83 286 aaPredicted RBP12.14□□□□□ -0.47
VARS-226ENST00000483275 SOX7Q9BT81 388 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 C20orf27Q9GZN8 174 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 SAP130Q9H0E3 1048 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 SLC38A1Q9H2H9 487 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 POLE3Q9NRF9 147 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.14□□□□□ -0.47
VARS-226ENST00000483275 DCTN4Q9UJW0 460 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 AMDHD2Q9Y303 409 aa12.14□□□□□ -0.47
VARS-226ENST00000483275 IGHV1-18A0A0C4DH31 117 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 VWC2LB2RUY7 222 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 NR5A2O00482 541 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 DNPH1O43598 174 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 GSNP06396 782 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 MYZAPP0CAP1 466 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 GKN3PP0CG01 181 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 MPGP29372 298 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 APOBEC3AP31941 199 aaPredicted RBP12.13□□□□□ -0.47
VARS-226ENST00000483275 SERPINB5P36952 375 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 ETV4P43268 484 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 NR4A2P43354 598 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 PDLIM4P50479 330 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 CEACAM7Q14002 265 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 CHI3L2Q15782 390 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 SWI5Q1ZZU3 235 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 MRPL2Q5T653 305 aaKnown RBP12.13□□□□□ -0.47
VARS-226ENST00000483275 KLHL24Q6TFL4 600 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 LINGO2Q7L985 606 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 AAED1Q7RTV5 226 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 SLC46A3Q7Z3Q1 461 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 ZIC4Q8N9L1 334 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 OR9K2Q8NGE7 335 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 WDR60Q8WVS4 1066 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 DDIT4LQ96D03 193 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 FOXN4Q96NZ1 517 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 VRK1Q99986 396 aaPredicted RBP12.13□□□□□ -0.47
VARS-226ENST00000483275 PIMREGQ9BSJ6 248 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 TMEM109Q9BVC6 243 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 CENPHQ9H3R5 247 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 EXOSC3Q9NQT5 275 aaKnown RBP12.13□□□□□ -0.47
VARS-226ENST00000483275 RLIMQ9NVW2 624 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 TMEM160Q9NX00 188 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 LPAR3Q9UBY5 353 aa12.13□□□□□ -0.47
VARS-226ENST00000483275 A0A096LPE4 126 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 PRSS51A0A1B0GVH4 220 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 A0A1W2PPZ6 126 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 AGAP5A6NIR3 686 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 LIPT2A6NK58 231 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 HAX1O00165 279 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 TYROBPO43914 113 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 AGR2O95994 175 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 C8BP07358 591 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 CSF3P09919 207 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 APEHP13798 732 aaKnown RBP12.12□□□□□ -0.47
VARS-226ENST00000483275 PRPS1P60891 318 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 CASP8Q14790 479 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 FAM166AQ6J272 317 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 PAQR6Q6TCH4 344 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 MYPOPQ86VE0 399 aaPredicted RBP12.12□□□□□ -0.47
VARS-226ENST00000483275 NUDCD3Q8IVD9 361 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 C17orf78Q8N4C9 275 aa12.12□□□□□ -0.47
VARS-226ENST00000483275 C1orf162Q8NEQ5 155 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms