RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 MMP28Q9H239 520 aa3.5□□□□□ -1.85
VPS13D-207ENST00000476169 RBKSQ9H477 322 aa3.5□□□□□ -1.85
VPS13D-207ENST00000476169 ZNF556Q9HAH1 456 aa3.5□□□□□ -1.85
VPS13D-207ENST00000476169 MYOZ2Q9NPC6 264 aa3.5□□□□□ -1.85
VPS13D-207ENST00000476169 ADAP2Q9NPF8 381 aa3.5□□□□□ -1.85
VPS13D-207ENST00000476169 MEPEQ9NQ76 525 aaPredicted RBP3.5□□□□□ -1.85
VPS13D-207ENST00000476169 SAMSN1Q9NSI8 373 aaKnown RBP3.5□□□□□ -1.85
VPS13D-207ENST00000476169 DEPPQ9NTK1 212 aa3.5□□□□□ -1.85
VPS13D-207ENST00000476169 SLC2A6Q9UGQ3 507 aa3.5□□□□□ -1.85
VPS13D-207ENST00000476169 KCNIP3Q9Y2W7 256 aa3.5□□□□□ -1.85
VPS13D-207ENST00000476169 ZCCHC11Q5TAX3 1644 aaKnown RBP3.5□□□□□ -1.85
VPS13D-207ENST00000476169 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 FANCAO15360 1455 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 ATP10AO60312 1499 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 DENND4BO75064 1496 aaPredicted RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 RAB19A4D1S5 217 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 VSTM2BA6NLU5 285 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 E7ESA3 106 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 K7EQD1 137 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 M0R3G1 203 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 AIREO43918 545 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 CXCL13O43927 109 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 LMX1BO60663 402 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 RAMP1O60894 148 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 NADKO95544 446 aaPredicted RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 FGFR1OPO95684 399 aaKnown RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 WNT2P09544 360 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 CT62P0C5K7 136 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 BCKDHBP21953 392 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 CCKARP32238 428 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 DEKP35659 375 aaKnown RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 ACVR1BP36896 505 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 GPR4P46093 362 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 CCNG1P51959 295 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 RPL36AP83881 106 aaKnown RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 RAD51Q06609 339 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 SELENBP1Q13228 472 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 ZNF177Q13360 481 aaPredicted RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 COTL1Q14019 142 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 ZNF77Q15935 545 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 DUSP7Q16829 419 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 UPP1Q16831 310 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 CNPY1Q3B7I2 92 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 TIGITQ495A1 244 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 PPM1LQ5SGD2 360 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 C1orf220Q5T0J3 134 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 CCDC122Q5T0U0 273 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 STPG1Q5TH74 334 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 FAM219BQ5XKK7 198 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 REEP3Q6NUK4 255 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 CCDC137Q6PK04 289 aaKnown RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 PGAP1Q75T13 922 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 CCDC71Q8IV32 467 aaPredicted RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 FAM86B1Q8N7N1 296 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 OR10V1Q8NGI7 309 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 OR51L1Q8NGJ5 315 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 OR10G7Q8NGN6 311 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 PLPPR1Q8TBJ4 325 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 CCDC12Q8WUD4 166 aaPredicted RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 TCTEX1D2Q8WW35 142 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 MRPS31Q92665 395 aaKnown RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 CIDECQ96AQ7 238 aaPredicted RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 C8orf44Q96CB5 159 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 NTNG2Q96CW9 530 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 ZBED6CLQ96FA7 236 aaPredicted RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 SLC29A1Q99808 456 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 TM6SF2Q9BZW4 377 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 REEP4Q9H6H4 257 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 THYN1Q9P016 225 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 CD300AQ9UGN4 299 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 PHF11Q9UIL8 331 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 C15orf41Q9Y2V0 281 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 USP16Q9Y5T5 823 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 KPTNQ9Y664 436 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 VPS8Q8N3P4 1428 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 SNED1Q8TER0 1413 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 SCN5AQ14524 2016 aa3.49□□□□□ -1.85
VPS13D-207ENST00000476169 GPATCH8Q9UKJ3 1502 aaKnown RBP3.49□□□□□ -1.85
VPS13D-207ENST00000476169 RAPGEF6Q8TEU7 1601 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 ADGRL1O94910 1474 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 TEX14Q8IWB6 1497 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 KIAA1210Q9ULL0 1709 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 PCF11O94913 1555 aaKnown RBP3.48□□□□□ -1.85
VPS13D-207ENST00000476169 POGZQ7Z3K3 1410 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 A0A087WW49 117 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 TRBV5-4A0A0C4DH59 114 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 KBTBD11-OT1A0A1B0GTJ5 212 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 A0A1B0GUS0 222 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 IDSB3KWA1 339 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 BMPR1BO00238 502 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 GOSR2O14653 212 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 SIVA1O15304 175 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 KDELR3O43731 214 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 PRKYO43930 277 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 PCDH7O60245 1069 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 CEACAM4O75871 244 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 CABYRO75952 493 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 ERLIN2O94905 339 aa3.48□□□□□ -1.85
VPS13D-207ENST00000476169 CCNB2O95067 398 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms