RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 RAF1P04049 648 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 WNT1P04628 370 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 ANXA7P20073 488 aaKnown RBP10.96□□□□□ -0.66
MSH6-204ENST00000445503 PSMB1P20618 241 aaKnown RBP10.96□□□□□ -0.66
MSH6-204ENST00000445503 DRD3P35462 400 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 ART1P52961 327 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 CTXN1P60606 82 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 SRSF5Q13243 272 aaKnown RBP10.96□□□□□ -0.66
MSH6-204ENST00000445503 GRK1Q15835 563 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 TCTE1Q5JU00 501 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 SLC25A30Q5SVS4 291 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 AGBL4Q5VU57 503 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 HDDC2Q7Z4H3 204 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 OR11H7Q8NGC8 314 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 OR1E3Q8WZA6 343 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 RNF170Q96K19 258 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 LMF1Q96S06 567 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 C20orf85Q9H1P6 137 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 B3GNT2Q9NY97 397 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 ABRACLQ9P1F3 81 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 KLK11Q9UBX7 282 aa10.96□□□□□ -0.66
MSH6-204ENST00000445503 A0A1B0GVI7 797 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 SLC25A12O75746 678 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 KLF8O95600 359 aaPredicted RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 UGT2B7P16662 529 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 HTR2AP28223 471 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 UBE2MP61081 183 aaKnown RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 POU4F2Q12837 409 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 ST3GAL2Q16842 350 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 ARHGAP11BQ3KRB8 267 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 EOGTQ5NDL2 527 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 ZBTB37Q5TC79 503 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 PRAMEF8Q5VWM4 474 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 PRAMEF7Q5VXH5 474 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 RNF113BQ8IZP6 322 aaKnown RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 CMTM4Q8IZR5 234 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 WDR92Q96MX6 357 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 EMC7Q9NPA0 242 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 THAP10Q9P2Z0 257 aaPredicted RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 FARSAQ9Y285 508 aaKnown RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 EXOGQ9Y2C4 368 aaKnown RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 STMND1H3BQB6 276 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 PTBP1P26599 531 aaKnown RBP eCLIP10.95□□□□□ -0.66
MSH6-204ENST00000445503 PTH2RP49190 550 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 PER3P56645 1201 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 EXOSC2Q13868 293 aaKnown RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 PCGF3Q3KNV8 242 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 SIGIRRQ6IA17 410 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 SSX6Q7RTT6 188 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 COMMD2Q86X83 199 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 REM2Q8IYK8 340 aaPredicted RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 LNX2Q8N448 690 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 CHST4Q8NCG5 386 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 OR4N2Q8NGD1 307 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 PMEPA1Q969W9 287 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 NKX3-1Q99801 234 aaPredicted RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 V9GY05 133 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 HEATR5BQ9P2D3 2071 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 TRAV18A0A075B6X5 111 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 GPR171O14626 319 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 DOK2O60496 412 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 EFEMP2O95967 443 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 ZGLP1P0C6A0 271 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 IGFALSP35858 605 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 MAT1AQ00266 395 aaKnown RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 SQSTM1Q13501 440 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 ITPRIPL2Q3MIP1 535 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 CD276Q5ZPR3 534 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 WDR88Q6ZMY6 472 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 ASB16Q96NS5 453 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 MCOLN1Q9GZU1 580 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 AICDAQ9GZX7 198 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 TSPAN10Q9H1Z9 355 aaPredicted RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 ERVMER34-1Q9H9K5 563 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 LIN7BQ9HAP6 207 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 INPP5EQ9NRR6 644 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 GRHPRQ9UBQ7 328 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 SCP2D1Q9UJQ7 156 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 BAIAP2Q9UQB8 552 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 MRPS2Q9Y399 296 aaKnown RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 P2RX6O15547 441 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 EPXP11678 715 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 DUSP8Q13202 625 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 YOD1Q5VVQ6 348 aaPredicted RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 TEX261Q6UWH6 196 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 ZNF550Q7Z398 422 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 C9orf62Q8N4C0 152 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 RFLNBQ8N5W9 214 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 BRIX1Q8TDN6 353 aaKnown RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 ULBP3Q9BZM4 244 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 SLC7A5P2Q9GIP4 190 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 OR8D2Q9GZM6 311 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 NARFLQ9H6Q4 476 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 MRPS18AQ9NVS2 196 aaKnown RBP10.95□□□□□ -0.66
MSH6-204ENST00000445503 U3KQ87 197 aa10.95□□□□□ -0.66
MSH6-204ENST00000445503 EML2O95834 649 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 ZNF250P15622 560 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 SRMP19623 302 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 AQP2P41181 271 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 FRKP42685 505 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms