RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ZNF41P51814 821 aaPredicted RBP10.95□□□□□ -0.66
PTPRF-208ENST00000437607 ARHGDIAP52565 204 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 ST3GAL3Q11203 375 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 POMZP3Q6PJE2 187 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 CDC20BQ86Y33 519 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 SVOPLQ8N434 492 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 OR5W2Q8NH69 310 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 RNF217Q8TC41 542 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 ADAMTS16Q8TE57 1224 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 EME1Q96AY2 570 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 SLC41A3Q96GZ6 507 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 EPYCQ99645 322 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 WFDC6Q9BQY6 131 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 SLC6A15Q9H2J7 730 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 CLEC4MQ9H2X3 399 aaPredicted RBP10.95□□□□□ -0.66
PTPRF-208ENST00000437607 ALKBH4Q9NXW9 302 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 KIF17Q9P2E2 1029 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 RHCGQ9UBD6 479 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 PLEKHA6Q9Y2H5 1048 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 RPH3AQ9Y2J0 694 aaPredicted RBP10.95□□□□□ -0.66
PTPRF-208ENST00000437607 LYVE1Q9Y5Y7 322 aa10.95□□□□□ -0.66
PTPRF-208ENST00000437607 ABCA2Q9BZC7 2435 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 ANKRD33BA6NCL7 494 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 FAAHO00519 579 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 CASQ2O14958 399 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-208ENST00000437607 SNPHO15079 494 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 SNX4O95219 450 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 GABRA1P14867 456 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 HTR2AP28223 471 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 PTGDSP41222 190 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 GAS1P54826 345 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 PIN1Q13526 163 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-208ENST00000437607 TRAM2Q15035 370 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 OR1Q1Q15612 314 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 IQCCQ4KMZ1 466 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 WBP2NLQ6ICG8 309 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 ZNF613Q6PF04 617 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 CBLN3Q6UW01 205 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 TSEN54Q7Z6J9 526 aaKnown RBP10.94□□□□□ -0.66
PTPRF-208ENST00000437607 PACS2Q86VP3 889 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 HIPK1Q86Z02 1210 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 ZDHHC13Q8IUH4 622 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 OR5K1Q8NHB7 308 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 NEIL3Q8TAT5 605 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 ARSGQ96EG1 525 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 TMEM41AQ96HV5 264 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 DHRS1Q96LJ7 313 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 JSRP1Q96MG2 331 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-208ENST00000437607 C9orf16Q9BUW7 83 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 ANGPTL4Q9BY76 406 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 RTN4RQ9BZR6 473 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 ANKRD19PQ9H560 264 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 EXO5Q9H790 373 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 PTGES2Q9H7Z7 377 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 ZFP64Q9NPA5 681 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 ACKR4Q9NPB9 350 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 KRCC1Q9NPI7 259 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-208ENST00000437607 VNN3Q9NY84 501 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 TAS2R10Q9NYW0 307 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 B4GALT7Q9UBV7 327 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 DKKL1Q9UK85 242 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 TMCC3Q9ULS5 477 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 SLC7A7Q9UM01 511 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 OAZ3Q9UMX2 235 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 BOKQ9UMX3 212 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-208ENST00000437607 A4GNTQ9UNA3 340 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 U3KQV3 271 aa10.94□□□□□ -0.66
PTPRF-208ENST00000437607 ARID1AO14497 2285 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 IGLV3-32A0A0A0MS00 114 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 A0A0B4J2E0 115 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 A0A1B0GWA3 101 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 A0A1B0GX12 115 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 A0A1W2PRQ8 180 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 C2orf72A6NCS6 295 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 A6NNC1 897 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 C17orf51A8MQB3 221 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 GNB5O14775 395 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 CHP2O43745 196 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 CCNB2O95067 398 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 PRSS23O95084 383 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 THRBP10828 461 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 UQCRC1P31930 480 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 CEACAM8P31997 349 aaPredicted RBP10.93□□□□□ -0.66
PTPRF-208ENST00000437607 ACAA2P42765 397 aaKnown RBP10.93□□□□□ -0.66
PTPRF-208ENST00000437607 ADAM8P78325 824 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 DGCR6Q14129 220 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 QPRTQ15274 297 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 EXOC3L2Q2M3D2 409 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 ALG10BQ5I7T1 473 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 DCST1Q5T197 706 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 SWT1Q5T5J6 900 aaKnown RBP10.93□□□□□ -0.66
PTPRF-208ENST00000437607 OR5M10Q6IEU7 315 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 SHQ1Q6PI26 577 aaKnown RBP10.93□□□□□ -0.66
PTPRF-208ENST00000437607 PLCZ1Q86YW0 608 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 EPHX4Q8IUS5 362 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 OR52J3Q8NH60 311 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 DUSP19Q8WTR2 217 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 DNAJA4Q8WW22 397 aaPredicted RBP10.93□□□□□ -0.66
PTPRF-208ENST00000437607 TMEM234Q8WY98 164 aa10.93□□□□□ -0.66
PTPRF-208ENST00000437607 SLC38A4Q969I6 547 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms