RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 OR52L1Q8NGH7 329 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 OR2V1Q8NHB1 315 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 MFSD8Q8NHS3 518 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 POC1BQ8TC44 478 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 CPNE4Q96A23 557 aaPredicted RBP9.11□□□□□ -0.95
CD44-207ENST00000425428 TAAR6Q96RI8 345 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 RSPO3Q9BXY4 272 aaPredicted RBP9.11□□□□□ -0.95
CD44-207ENST00000425428 FKRPQ9H9S5 495 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 KRT84Q9NSB2 600 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 ALKBH4Q9NXW9 302 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 OAZ3Q9UMX2 235 aa9.11□□□□□ -0.95
CD44-207ENST00000425428 PIEZO2Q9H5I5 2752 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 A0A1B0GVC2 190 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 FIGNL2A6NMB9 653 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 ENO4A6NNW6 628 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 NPIPA2E9PIF3 369 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 NPIPA3F8WFD2 350 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 PRSS23O95084 383 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 PMS2P2O95744 297 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 CH25HO95992 272 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 ADAP00813 363 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 HOXD4P09016 255 aaPredicted RBP9.1□□□□□ -0.95
CD44-207ENST00000425428 CELA3AP09093 270 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 FCGR2AP12318 317 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 EDN3P14138 238 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 GABRA1P14867 456 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 FUT1P19526 365 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 PTGER4P35408 488 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 CTBP2P56545 445 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 PRPS1P60891 318 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 MYBPHQ13203 477 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 OR7A5Q15622 319 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 TMEM44Q2T9K0 475 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 IQCCQ4KMZ1 466 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 VASNQ6EMK4 673 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 TMEM225Q6GV28 225 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 TMPPEQ6ZT21 453 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 NANOGNBQ7Z5D8 188 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 CPT1CQ8TCG5 803 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 MAGEE2Q8TD90 523 aaPredicted RBP9.1□□□□□ -0.95
CD44-207ENST00000425428 CIB1Q99828 191 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 PRSS27Q9BQR3 290 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 PRRG3Q9BZD7 231 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 ZNF229Q9UJW7 825 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 POFUT2Q9Y2G5 429 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 MGAQ8IWI9 3026 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 PKD1L2Q7Z442 2459 aa9.1□□□□□ -0.95
CD44-207ENST00000425428 A0A1B0GTH9 108 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 UNC119BA6NIH7 251 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 AHRRA9YTQ3 701 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 H3BN98 237 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 TNFSF11O14788 317 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 OR7A10O76100 309 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 CPN1P15169 458 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 ENPP1P22413 925 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 MST1P26927 711 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 DIO1P49895 249 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 RAC3P60763 192 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 PPP1R8Q12972 351 aaKnown RBP9.09□□□□□ -0.95
CD44-207ENST00000425428 TSPAN31Q12999 210 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 PMS2P3Q13401 168 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 RNFT1Q5M7Z0 435 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 C1orf94Q6P1W5 598 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 TMPRSS11FQ6ZWK6 438 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 TSEN54Q7Z6J9 526 aaKnown RBP9.09□□□□□ -0.95
CD44-207ENST00000425428 PACRGLQ8N7B6 248 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 OR4C15Q8NGM1 316 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 PFN4Q8NHR9 129 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 OSTF1Q92882 214 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 GTPBP3Q969Y2 492 aaKnown RBP9.09□□□□□ -0.95
CD44-207ENST00000425428 SNRNP40Q96DI7 357 aaKnown RBP9.09□□□□□ -0.95
CD44-207ENST00000425428 FAM46AQ96IP4 442 aaKnown RBP9.09□□□□□ -0.95
CD44-207ENST00000425428 FEVQ99581 238 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 ZNF426Q9BUY5 554 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 UCK2Q9BZX2 261 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 OR11A1Q9GZK7 315 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 PAPOLBQ9NRJ5 636 aaKnown RBP9.09□□□□□ -0.95
CD44-207ENST00000425428 MAN2C1Q9NTJ4 1040 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 SPTA1P02549 2419 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 A0A1W2PNR3 127 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 BLOC1S5-TXNDC5H3BN57 136 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 AKAP8O43823 692 aaKnown RBP9.09□□□□□ -0.95
CD44-207ENST00000425428 SEMA7AO75326 666 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 VAMP5O95183 116 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 HPRP00739 348 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 OPN1LWP04000 364 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 TPOP07202 933 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 POU2F1P14859 743 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 ZNF708P17019 499 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 PTNP21246 168 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 AHCYP23526 432 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 IGFBP5P24593 272 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 FPR3P25089 353 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 RPL4P36578 427 aaKnown RBP9.09□□□□□ -0.95
CD44-207ENST00000425428 GPR4P46093 362 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 LIMS1P48059 325 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 STARP49675 285 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 ALDH3A2P51648 485 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 IST1P53990 364 aa9.09□□□□□ -0.95
CD44-207ENST00000425428 CLDN15P56746 228 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms