RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 AMDHD2Q9Y303 409 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 HDGFL3Q9Y3E1 203 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 SPIN1Q9Y657 262 aaPredicted RBP7.06□□□□□ -1.28
VIM-202ENST00000421459 CADP27708 2225 aa7.06□□□□□ -1.28
VIM-202ENST00000421459 A0A096LPE4 126 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 A0A1W2PPZ6 126 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 LYNX1G3V0Z9 82 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 HMGN4O00479 90 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 RNASET2O00584 256 aaKnown RBP7.05□□□□□ -1.28
VIM-202ENST00000421459 AK1P00568 194 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 BPGMP07738 259 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 CHRM4P08173 479 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 CELA3BP08861 270 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 OR4A8P0C604 315 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 GKN3PP0CG01 181 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 LYNX1P0DP58 116 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 UQCRC2P22695 453 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 MPGP29372 298 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 CALCRP30988 508 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 SERPINF1P36955 418 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 CDKN2CP42773 168 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 SELENOPP49908 381 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 PRPS1P60891 318 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 SLC35A1P78382 337 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 OR7A5Q15622 319 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 ADIPOQQ15848 244 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 CR1LQ2VPA4 569 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 COX20Q5RI15 118 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 OTUD3Q5T2D3 398 aaPredicted RBP7.05□□□□□ -1.28
VIM-202ENST00000421459 AP1ARQ63HQ0 302 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 SAXO2Q658L1 398 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 BHLHB9Q6PI77 547 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 AAED1Q7RTV5 226 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 SLC46A3Q7Z3Q1 461 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 GPAT4Q86UL3 456 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 MYPOPQ86VE0 399 aaPredicted RBP7.05□□□□□ -1.28
VIM-202ENST00000421459 RNF130Q86XS8 419 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 KDM8Q8N371 416 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 NATD1Q8N6N6 113 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 ZNF781Q8N8C0 355 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 OR9K2Q8NGE7 335 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 PNPT1Q8TCS8 783 aaKnown RBP7.05□□□□□ -1.28
VIM-202ENST00000421459 MIPOL1Q8TD10 442 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 TEX37Q96LM6 180 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 NAA11Q9BSU3 229 aaPredicted RBP7.05□□□□□ -1.28
VIM-202ENST00000421459 C20orf27Q9GZN8 174 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 SLC38A1Q9H2H9 487 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 RLIMQ9NVW2 624 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 TRAPPC4Q9Y296 219 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 SLC9A8Q9Y2E8 581 aa7.05□□□□□ -1.28
VIM-202ENST00000421459 PRSS51A0A1B0GVH4 220 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 SH3PXD2BA1X283 911 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 LIPT2A6NK58 231 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 ANKRD28O15084 1053 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 UPK3AO75631 287 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 GSNP06396 782 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 IGFBP1P08833 259 aaPredicted RBP7.04□□□□□ -1.28
VIM-202ENST00000421459 CSF3P09919 207 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 PRG2P13727 222 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 ITGA2P17301 1181 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 IL12AP29459 219 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 CHI3L1P36222 383 aaPredicted RBP7.04□□□□□ -1.28
VIM-202ENST00000421459 SLC1A3P43003 542 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 CLK1P49759 484 aaKnown RBP7.04□□□□□ -1.28
VIM-202ENST00000421459 P2RY4P51582 365 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 POLR2HP52434 150 aaKnown RBP7.04□□□□□ -1.28
VIM-202ENST00000421459 HGFACQ04756 655 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 CASP8Q14790 479 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 TRIP10Q15642 601 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 MAPK11Q15759 364 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 TBRG1Q3YBR2 411 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 SPANXN4Q5MJ08 99 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 ATAD3BQ5T9A4 648 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 ANKRD16Q6P6B7 361 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 SSX8Q7RTT4 187 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 VRK2Q86Y07 508 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 C17orf78Q8N4C9 275 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 C1orf162Q8NEQ5 155 aaPredicted RBP7.04□□□□□ -1.28
VIM-202ENST00000421459 OR8J2Q8NGG1 315 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 OR1K1Q8NGR3 316 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 BCL2L2Q92843 193 aaPredicted RBP7.04□□□□□ -1.28
VIM-202ENST00000421459 DDIT4LQ96D03 193 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 NEURL3Q96EH8 262 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 ALKBH3Q96Q83 286 aaPredicted RBP7.04□□□□□ -1.28
VIM-202ENST00000421459 SLC38A2Q96QD8 506 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 SLC35A5Q9BS91 424 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 DPY30Q9C005 99 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 ADAM19Q9H013 955 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 EXOSC3Q9NQT5 275 aaKnown RBP7.04□□□□□ -1.28
VIM-202ENST00000421459 CA10Q9NS85 328 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 PARPBPQ9NWS1 579 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 MKS1Q9NXB0 559 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 NOP53Q9NZM5 478 aaKnown RBP7.04□□□□□ -1.28
VIM-202ENST00000421459 SEC14L4Q9UDX3 406 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 MARCOQ9UEW3 520 aaPredicted RBP7.04□□□□□ -1.28
VIM-202ENST00000421459 PCDHGB4Q9UN71 923 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 FKBP7Q9Y680 259 aa7.04□□□□□ -1.28
VIM-202ENST00000421459 LOC390937A0A1W2PQ73 354 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 TMEM129A0AVI4 362 aa7.03□□□□□ -1.28
VIM-202ENST00000421459 ZNF503-AS2A6NEH8 195 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms