RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ZNF791Q3KP31 576 aaPredicted RBP13.58□□□□□ -0.24
USP4-203ENST00000415188 PDZK1Q5T2W1 519 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 FAM131AQ6UXB0 335 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 ZNF440Q8IYI8 595 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 ZNF843Q8N446 348 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 SIRT6Q8N6T7 355 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 OR51G2Q8NGK0 314 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 OR13C2Q8NGS9 318 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 ACOT12Q8WYK0 555 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 RIT1Q92963 219 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 DIRAS2Q96HU8 199 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 VSTM2LQ96N03 204 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 ALG8Q9BVK2 526 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 IFT27Q9BW83 186 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.58□□□□□ -0.24
USP4-203ENST00000415188 SEMA4CQ9C0C4 833 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 TPK1Q9H3S4 243 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 Q9N2J8 555 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 FAM60AQ9NP50 221 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 TRIM36Q9NQ86 728 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 PRTFDC1Q9NRG1 225 aa13.58□□□□□ -0.24
USP4-203ENST00000415188 DNAJB12Q9NXW2 375 aaKnown RBP13.58□□□□□ -0.24
USP4-203ENST00000415188 IGHV1OR21-1A0A087WYE8 117 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 CCDC182A6NF36 153 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 FABP12A6NFH5 140 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 C12orf71A8MTZ7 269 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 POLR1CO15160 346 aaPredicted RBP13.57□□□□□ -0.24
USP4-203ENST00000415188 RNF13O43567 381 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 LALBAP00709 142 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 SAGP10523 405 aaPredicted RBP13.57□□□□□ -0.24
USP4-203ENST00000415188 TYRP1P17643 537 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 CELP19835 753 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 CASP3P42574 277 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 GPR3P46089 330 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 CAPZBP47756 277 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 MTNR1BP49286 362 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 PPP1CAP62136 330 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 PSG6Q00889 435 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 LY6DQ14210 128 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 AGAP6Q5VW22 663 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 ZNF544Q6NX49 715 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 RTL4Q6ZR62 310 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 IL17RDQ8NFM7 739 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 CNOT9Q92600 299 aaKnown RBP13.57□□□□□ -0.24
USP4-203ENST00000415188 KISS1RQ969F8 398 aaPredicted RBP13.57□□□□□ -0.24
USP4-203ENST00000415188 PMEPA1Q969W9 287 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 RBM18Q96H35 190 aaKnown RBP13.57□□□□□ -0.24
USP4-203ENST00000415188 AGAP4Q96P64 663 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 DGAT2Q96PD7 388 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 SLC22A4Q9H015 551 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 STARD5Q9NSY2 213 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 C20orf141Q9NUB4 165 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 C14orf119Q9NWQ9 140 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 BABAM2Q9NXR7 383 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 GCN1Q92616 2671 aaKnown RBP13.57□□□□□ -0.24
USP4-203ENST00000415188 CFAP46Q8IYW2 2715 aa13.57□□□□□ -0.24
USP4-203ENST00000415188 DAPL1A0PJW8 107 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 SLC9B1P1A6NJY1 282 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 SLC19A2O60779 497 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 PPM1BO75688 479 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 MT-ND5P03915 603 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 TRAPPC2P0DI81 140 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 TRAPPC2BP0DI82 140 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 LIPCP11150 499 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 PEPDP12955 493 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 SLC2A5P22732 501 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 F8A1P23610 371 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 ACAA2P42765 397 aaKnown RBP13.56□□□□□ -0.24
USP4-203ENST00000415188 RPS5P46782 204 aaKnown RBP13.56□□□□□ -0.24
USP4-203ENST00000415188 GPR143P51810 404 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 ATP12AP54707 1039 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 TPTEP56180 551 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 SELENBP1Q13228 472 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 RIN1Q13671 783 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 TCTE1Q5JU00 501 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 ULK3Q6PHR2 472 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 LINC00114Q6XXX2 140 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 DGAT2L6Q6ZPD8 337 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 ZAR1Q86SH2 424 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 VASH2Q86V25 355 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 KLBQ86Z14 1044 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 SLC37A3Q8NCC5 494 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 C7orf57Q8NEG2 295 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 NEIL3Q8TAT5 605 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 DOK4Q8TEW6 326 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 ATP13A2Q9NQ11 1180 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 MEPEQ9NQ76 525 aaPredicted RBP13.56□□□□□ -0.24
USP4-203ENST00000415188 FLRT3Q9NZU0 649 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 RPS6KB2Q9UBS0 482 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 PRODH2Q9UF12 536 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 EPHA6Q9UF33 1036 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 KLHL21Q9UJP4 597 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 SERTAD3Q9UJW9 196 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 PLCL2Q9UPR0 1127 aa13.56□□□□□ -0.24
USP4-203ENST00000415188 A0A1W2PQ09 198 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 GTPBP1O00178 669 aaKnown RBP13.55□□□□□ -0.24
USP4-203ENST00000415188 FOXS1O43638 330 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 TMCC2O75069 709 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 HLA-DQB1P01920 261 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 HSD17B7P56937 341 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms