RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TRPC4APQ8TEL6 797 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 SNRNP40Q96DI7 357 aaKnown RBP5.74□□□□□ -1.49
USP40-202ENST00000409945 ZNF48Q96MX3 618 aaPredicted RBP5.74□□□□□ -1.49
USP40-202ENST00000409945 ZNF382Q96SR6 550 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 MAPKAP1Q9BPZ7 522 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 EML4Q9HC35 981 aaKnown RBP5.74□□□□□ -1.49
USP40-202ENST00000409945 GIMAP4Q9NUV9 329 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 OLAHQ9NV23 265 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 TMEM216Q9P0N5 145 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 VPS29Q9UBQ0 182 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 YARS2Q9Y2Z4 477 aaKnown RBP5.74□□□□□ -1.49
USP40-202ENST00000409945 IGKV3D-11A0A0A0MRZ8 115 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 GNG14A0A1W2PPG7 69 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 ANKUB1A6NFN9 424 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 C17orf105B2RV13 164 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 KLRC4-KLRK1H3BQV0 150 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 BOLA2-SMG1P6H3BVE0 249 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 RTCAO00442 366 aaKnown RBP5.74□□□□□ -1.49
USP40-202ENST00000409945 PLPP1O14494 284 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 OR7A17O14581 309 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 SPAG7O75391 227 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 NR2F1P10589 423 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 CPA3P15088 417 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 SSTR2P30874 369 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 SSR4P51571 173 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 CDH13P55290 713 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 ACSM2AQ08AH3 577 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 OR1C1Q15619 314 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 SPIN4Q56A73 249 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 NSUN5P2Q63ZY6 315 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 ACSM2BQ68CK6 577 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 H3F3CQ6NXT2 135 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 ZYG11AQ6WRX3 759 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 CUZD1Q86UP6 607 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 TICAM1Q8IUC6 712 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 CRLF3Q8IUI8 442 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 ST13P4Q8IZP2 240 aaPredicted RBP5.74□□□□□ -1.49
USP40-202ENST00000409945 EID3Q8N140 333 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 C4orf33Q8N1A6 199 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 BANPQ8N9N5 519 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 OR52B6Q8NGF0 335 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 OR8K3Q8NH51 312 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 SLC22A8Q8TCC7 542 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 PSMF1Q92530 271 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 L3HYPDHQ96EM0 354 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 SHCBP1LQ9BZQ2 653 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 OR8D2Q9GZM6 311 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 HRH4Q9H3N8 390 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 DDX31Q9H8H2 851 aaKnown RBP5.74□□□□□ -1.49
USP40-202ENST00000409945 ASF1BQ9NVP2 202 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 CFL2Q9Y281 166 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 KLF13Q9Y2Y9 288 aaPredicted RBP5.74□□□□□ -1.49
USP40-202ENST00000409945 ZNF780BQ9Y6R6 833 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 CNTRLQ7Z7A1 2325 aa5.74□□□□□ -1.49
USP40-202ENST00000409945 SCN2AQ99250 2005 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 DOCK10Q96BY6 2186 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 A0A1W2PPM1 405 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 LDB3O75112 727 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 OR4F21O95013 312 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 NDUFB4O95168 129 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 GPR75O95800 540 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 TOMM40O96008 361 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 KLK1P06870 262 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 ALDH3A1P30838 453 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 ARRB2P32121 409 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 RFX2P48378 723 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 HLCSP50747 726 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 DNAJB13P59910 316 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 TRA2BP62995 288 aaKnown RBP5.73□□□□□ -1.49
USP40-202ENST00000409945 RPP38P78345 283 aaKnown RBP5.73□□□□□ -1.49
USP40-202ENST00000409945 HEPACAMQ14CZ8 416 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 ADNP2Q6IQ32 1131 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 SLC25A25Q6KCM7 469 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 OPN5Q6U736 354 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 DND1Q8IYX4 353 aaKnown RBP5.73□□□□□ -1.49
USP40-202ENST00000409945 KIRREL3Q8IZU9 778 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 CYP4Z2PQ8N1L4 340 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 POGLUT1Q8NBL1 392 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 ST6GALNAC3Q8NDV1 305 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 OR4K14Q8NGD5 310 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 GRHL3Q8TE85 626 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 OIT3Q8WWZ8 545 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 RIT1Q92963 219 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 NCLNQ969V3 563 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 PGAM5Q96HS1 289 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 ZBTB20Q9HC78 741 aaPredicted RBP5.73□□□□□ -1.49
USP40-202ENST00000409945 MID1IP1Q9NPA3 183 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 HPF1Q9NWY4 346 aa5.73□□□□□ -1.49
USP40-202ENST00000409945 A0A0A6YYD5 115 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 RPS10-NUDT3A0A1W2PQS6 291 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 CFAP73A6NFT4 308 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 OR6C76A6NM76 312 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 C4orf51C9J302 202 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 MANBAO00462 879 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 PLIN3O60664 434 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 EDF1O60869 148 aaKnown RBP5.72□□□□□ -1.49
USP40-202ENST00000409945 DCTN3O75935 186 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 F10P00742 488 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 PDYNP01213 254 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 SLC35E2P0CK97 266 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms