RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 HIST3H2AQ7L7L0 130 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 ZNF227Q86WZ6 799 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 GHDCQ8N2G8 530 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 ZNF540Q8NDQ6 660 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 OR2M3Q8NG83 312 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 RNF138Q8WVD3 245 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 ST8SIA1Q92185 356 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SMPDL3BQ92485 455 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 HIST1H2ACQ93077 130 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 C1GALT1C1Q96EU7 318 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 DCBLD2Q96PD2 775 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SLC38A2Q96QD8 506 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 RHNO1Q9BSD3 238 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TMEM43Q9BTV4 400 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 UBQLN3Q9H347 655 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 CPNE5Q9HCH3 593 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TIMMDC1Q9NPL8 285 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 DEPPQ9NTK1 212 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 ZNF226Q9NYT6 803 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 IL20Q9NYY1 176 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 DNAJC27Q9NZQ0 273 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SEC14L4Q9UDX3 406 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SIGLEC7Q9Y286 467 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 ZNF337Q9Y3M9 751 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SPENQ96T58 3664 aaKnown RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 ZZEF1O43149 2961 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TLN1Q9Y490 2541 aaKnown RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 EXPH5Q8NEV8 1989 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 A8MVM7 634 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SLC1A7O00341 560 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TLX3O43711 291 aaPredicted RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 WBP4O75554 376 aaKnown RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 NEURL1O76050 574 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 OR7A10O76100 309 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SLC2A10O95528 541 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 PPP1R3DO95685 299 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 HK1P19367 917 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 AQP2P41181 271 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 PCYT1AP49585 367 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 CDC20Q12834 499 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 ZNF74Q16587 644 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 PLPPR5Q32ZL2 321 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 C11orf91Q3C1V1 193 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 C1orf140Q5VVS0 124 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 LAIR2Q6ISS4 152 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 NANOGNBQ7Z5D8 188 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 YRDCQ86U90 279 aaKnown RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 ZNF248Q8NDW4 579 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 FDCSPQ8NFU4 85 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 OR4Q3Q8NH05 313 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 RHOXF1Q8NHV9 184 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 APH1BQ8WW43 257 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 HDAC2Q92769 488 aaKnown RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 ARL5BQ96KC2 179 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 LRR1Q96L50 414 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 UBL7Q96S82 380 aaPredicted RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 CCNL2Q96S94 520 aaPredicted RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 SLC19A3Q9BZV2 496 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 MCCC2Q9HCC0 563 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 HHATLQ9HCP6 504 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SH2D2AQ9NP31 389 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SCN3BQ9NY72 215 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 HSPE1-MOB4S4R3N1 261 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TRAV36DV7A0A075B6V5 113 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 PINLYPA6NC86 204 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 FAM183AA6NL82 134 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 C11orf98E9PRG8 122 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 SNPHO15079 494 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 EFSO43281 561 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 ENTPD6O75354 484 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 PTP4A3O75365 173 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 CBR3O75828 277 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 AHSA1O95433 338 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 CLPTM1O96005 669 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 F13BP05160 661 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 RFPL3SP0C7P2 107 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 CRHBPP24387 322 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 GTF2E2P29084 291 aaKnown RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 APOBEC1P41238 236 aaKnown RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 ERVK-25P63136 954 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 CDK5Q00535 292 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 LTBQ06643 244 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 OR7A5Q15622 319 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 PGGHGQ32M88 737 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 TMEM176BQ3YBM2 270 aaPredicted RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 GLYR1Q49A26 553 aaPredicted RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 AHSA2Q719I0 299 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 SLC46A3Q7Z3Q1 461 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 GALNTL5Q7Z4T8 443 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 EGFL6Q8IUX8 553 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 FADS6Q8N9I5 356 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 OR8J1Q8NGP2 316 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 OR14L1PQ8NHC6 308 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 MOSPD2Q8NHP6 518 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 SNIP1Q8TAD8 396 aaKnown RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 DDIT4LQ96D03 193 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 MRGPRX4Q96LA9 322 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 FRMD6Q96NE9 622 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 ERMAPQ96PL5 475 aaPredicted RBP3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms