RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 RBM4Q9BWF3 364 aaKnown RBP16.28■□□□□ 0.2
SDC1-203ENST00000403076 TAPBPLQ9BX59 468 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 OSBPL10Q9BXB5 764 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 GABARAPL1Q9H0R8 117 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 VCXQ9H320 206 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 MED12Q93074 2177 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 LAMA5O15230 3695 aa16.28■□□□□ 0.2
SDC1-203ENST00000403076 A0A1W2PNR3 127 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 HTR3EA5X5Y0 456 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 SOCS2O14508 198 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 NPIPB7O75200 414 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 ADAP00813 363 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 IGHG3P01860 377 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 BMP7P18075 431 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 CBLP22681 906 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 OMPP47874 163 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 DAPP51397 102 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 CTBP2P56545 445 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 MYBPHQ13203 477 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 DAG1Q14118 895 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 PDSS1Q5T2R2 415 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 FAM69AQ5T7M9 428 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 ANKRD34AQ69YU3 496 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 C1orf94Q6P1W5 598 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 SIAH3Q8IW03 269 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 WBP1Q96G27 269 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 PSD2Q9BQI7 771 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 HDGFL3Q9Y3E1 203 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 ORC6Q9Y5N6 252 aa16.27■□□□□ 0.2
SDC1-203ENST00000403076 DSPP15924 2871 aaKnown RBP16.27■□□□□ 0.2
SDC1-203ENST00000403076 LRRN3E7EW58 273 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 SULT2B1O00204 365 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 EIF1AYO14602 144 aaKnown RBP16.26■□□□□ 0.19
SDC1-203ENST00000403076 HIST1H2ABP04908 130 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 FUT1P19526 365 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 MAKP20794 623 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 GTF2E2P29084 291 aaKnown RBP16.26■□□□□ 0.19
SDC1-203ENST00000403076 ALDH3A2P51648 485 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 CLDN20P56880 219 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 NUP107P57740 925 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 OR2B6P58173 313 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 SRYQ05066 204 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 OR7A5Q15622 319 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 PPP4R4Q6NUP7 873 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 TMPRSS11FQ6ZWK6 438 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 HIST3H2AQ7L7L0 130 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 MEIOBQ8N635 442 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 HIST1H2ACQ93077 130 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 NIPSNAP1Q9BPW8 284 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 DGCR6LQ9BY27 220 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 UCK2Q9BZX2 261 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 NANSQ9NR45 359 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 KRT84Q9NSB2 600 aa16.26■□□□□ 0.19
SDC1-203ENST00000403076 A0A0J9YW62 118 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 UNC119BA6NIH7 251 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 TTLL8A6PVC2 850 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 OR7A10O76100 309 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 IGF2P01344 180 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 BGLAPP02818 100 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 GSTM3P21266 225 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 TSPAN31Q12999 210 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 ZNF74Q16587 644 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 VASNQ6EMK4 673 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 FAHD1Q6P587 224 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 PCSK4Q6UW60 755 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 TMPPEQ6ZT21 453 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 MAMDC2Q7Z304 686 aaPredicted RBP16.25■□□□□ 0.19
SDC1-203ENST00000403076 GALNT5Q7Z7M9 940 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 MFSD8Q8NHS3 518 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 FAR1Q8WVX9 515 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 C8orf4Q9NR00 106 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 PAPOLBQ9NRJ5 636 aaKnown RBP16.25■□□□□ 0.19
SDC1-203ENST00000403076 TNFRSF10DQ9UBN6 386 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 ZNF407Q9C0G0 2248 aa16.25■□□□□ 0.19
SDC1-203ENST00000403076 TNFSF11O14788 317 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 WISP2O76076 250 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 MT-ATP6P00846 226 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 IMPDH2P12268 514 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 IGFBP5P24593 272 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 FPR3P25089 353 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 GSSP48637 474 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 LHX2P50458 406 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 SUCLG1P53597 346 aaKnown RBP16.24■□□□□ 0.19
SDC1-203ENST00000403076 PPP2R2BQ00005 443 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 MFSD13AQ14CX5 517 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 KRTCAP3Q53RY4 240 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 NHSL2Q5HYW2 709 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 KDM4DQ6B0I6 523 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 HBMQ6B0K9 141 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 ESPNLQ6ZVH7 1005 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 OAFQ86UD1 273 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 GHDCQ8N2G8 530 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 PACRGLQ8N7B6 248 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 OR6S1Q8NH40 331 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 OR2V1Q8NHB1 315 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 DNAJC9Q8WXX5 260 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 SNRNP40Q96DI7 357 aaKnown RBP16.24■□□□□ 0.19
SDC1-203ENST00000403076 GPR137Q96N19 417 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 MOGAT1Q96PD6 335 aa16.24■□□□□ 0.19
SDC1-203ENST00000403076 TIMP4Q99727 224 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms