RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 FRMPD1Q5SYB0 1578 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 TRBV9A0A0B4J1U6 114 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 LRIT2A6NDA9 550 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 MGAT4DA6NG13 374 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 PRSS44E7EML9 344 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 LMO7DNF2Z398 122 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 EPHB6O15197 1021 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 ZNHIT1O43257 154 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 HUS1O60921 280 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 RPN2P04844 631 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 MYL2P10916 166 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 CNR1P21554 472 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 UGT1A4P22310 534 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 RFX3P48380 749 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 MLLT10P55197 1068 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 OR2B6P58173 313 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 BRWD1-AS2P59051 145 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 BTG1P62324 171 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 ERVK-25P63136 954 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 NTHL1P78549 312 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 SMARCB1Q12824 385 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 PRTGQ2VWP7 1150 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 HLA-BQ31612 363 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 MS4A18Q3C1V0 323 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 TMEM52BQ4KMG9 183 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 PRR5LQ6MZQ0 368 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 RFWD3Q6PCD5 774 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 RHBDF2Q6PJF5 856 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 UTS2BQ765I0 119 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF554Q86TJ5 538 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 ERICH1Q86X53 443 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 LIX1Q8N485 282 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 TBC1D19Q8N5T2 526 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 INO80EQ8NBZ0 244 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-204ENST00000399489 OR4F17Q8NGA8 305 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 OR4F5Q8NH21 305 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 HSD17B8Q92506 261 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 RAD51AP1Q96B01 352 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 ABHD8Q96I13 439 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 SERAC1Q96JX3 654 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 OR4F4Q96R69 305 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 CIB1Q99828 191 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 MAPKAP1Q9BPZ7 522 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 TMEM204Q9BSN7 226 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 DERL2Q9GZP9 239 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 FNDC4Q9H6D8 234 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-204ENST00000399489 SLC40A1Q9NP59 571 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 NRN1Q9NPD7 142 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 NANSQ9NR45 359 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 TMEM30AQ9NV96 361 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 MYO6Q9UM54 1294 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 UGGT2Q9NYU1 1516 aa3.55□□□□□ -1.84
HMGB1-204ENST00000399489 CFAP43Q8NDM7 1665 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 LTBP4Q8N2S1 1624 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 IQGAP2Q13576 1575 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 LOC101059948A0A1B0GTJ6 334 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 FABP12A6NFH5 140 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 RNASEK-C17orf49H0YIS7 233 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 M0R3G1 203 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 AIM2O14862 343 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 DENRO43583 198 aaKnown RBP3.54□□□□□ -1.84
HMGB1-204ENST00000399489 XPNPEP2O43895 674 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 ENTPD5O75356 428 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 GAGE7O76087 117 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 FGF19O95750 216 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 IGHG4P01861 327 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 HMGN1P05114 100 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 GAGE12FP0CL80 117 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 GAGE12GP0CL81 117 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 GAGE12IP0CL82 117 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 NR2C1P13056 603 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 ITGA2P17301 1181 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 ATF6P18850 670 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 SYT1P21579 422 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 GNA11P29992 359 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 SSTR2P30874 369 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 HMGCLP35914 325 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 SLC26A3P40879 764 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 GNPDA1P46926 289 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 RPL27P61353 136 aaKnown RBP3.54□□□□□ -1.84
HMGB1-204ENST00000399489 GAGE1Q13065 139 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 GAGE4Q13068 117 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 GCKRQ14397 625 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 INPP5JQ15735 1006 aaPredicted RBP3.54□□□□□ -1.84
HMGB1-204ENST00000399489 ISXQ2M1V0 245 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 CCDC153Q494R4 210 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 DMRTC1Q5HYR2 192 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 DDI2Q5TDH0 399 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 STUMQ69YW2 141 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 REEP3Q6NUK4 255 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 SLC25A47Q6Q0C1 308 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 PARM1Q6UWI2 310 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 ASB18Q6ZVZ8 466 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 CYS1Q717R9 158 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 HDDC2Q7Z4H3 204 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 HSD11B1LQ7Z5J1 315 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 CTU1Q7Z7A3 348 aaKnown RBP3.54□□□□□ -1.84
HMGB1-204ENST00000399489 KMT5CQ86Y97 462 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 ODF3L1Q8IXM7 274 aa3.54□□□□□ -1.84
HMGB1-204ENST00000399489 SYS1Q8N2H4 156 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms