RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 PCYT1AP49585 367 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 OR2B6P58173 313 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 SLC35A1P78382 337 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 H3F3AP84243 136 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 RASGEF1BQ0VAM2 473 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 NPTX1Q15818 432 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 ELOA3BQ3SY89 546 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 LRRC23Q53EV4 343 aaPredicted RBP19.35■□□□□ 0.69
CLN3-207ENST00000395653 SWT1Q5T5J6 900 aaKnown RBP19.35■□□□□ 0.69
CLN3-207ENST00000395653 ABLIM2Q6H8Q1 611 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 KIF18BQ86Y91 864 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 ELOA3Q8NG57 546 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 PROX1Q92786 737 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 SLC38A4Q969I6 547 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 SLC47A1Q96FL8 570 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 MCHR1Q99705 422 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 OPN3Q9H1Y3 402 aaPredicted RBP19.35■□□□□ 0.69
CLN3-207ENST00000395653 GALNT8Q9NY28 637 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 SELENONQ9NZV5 590 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 GMPR2Q9P2T1 348 aaKnown RBP19.35■□□□□ 0.69
CLN3-207ENST00000395653 ING1Q9UK53 422 aaPredicted RBP19.35■□□□□ 0.69
CLN3-207ENST00000395653 SLC9A8Q9Y2E8 581 aa19.35■□□□□ 0.69
CLN3-207ENST00000395653 GPIP06744 558 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 FPR1P21462 350 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 PDK3Q15120 406 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 CYBRD1Q53TN4 286 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 C1orf140Q5VVS0 124 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 ZNF613Q6PF04 617 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 C5orf46Q6UWT4 87 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 TUSC5Q8IXB3 177 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 OR4D11Q8NGI4 311 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 VANGL1Q8TAA9 524 aaPredicted RBP19.34■□□□□ 0.69
CLN3-207ENST00000395653 PIGXQ8TBF5 258 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 PCDHAC1Q9H158 963 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 LIPT2A6NK58 231 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 ZNF724A8MTY0 619 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 EGR4Q05215 589 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 ZNF474Q6S9Z5 364 aaPredicted RBP19.34■□□□□ 0.69
CLN3-207ENST00000395653 PAQR6Q6TCH4 344 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 LSRQ86X29 649 aaPredicted RBP19.34■□□□□ 0.69
CLN3-207ENST00000395653 RBM45Q8IUH3 476 aaKnown RBP19.34■□□□□ 0.69
CLN3-207ENST00000395653 PGAM4Q8N0Y7 254 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 KCTD14Q9BQ13 255 aaPredicted RBP19.34■□□□□ 0.69
CLN3-207ENST00000395653 NDE1Q9NXR1 346 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 ELOVL5Q9NYP7 299 aa19.34■□□□□ 0.69
CLN3-207ENST00000395653 ANKHD1Q8IWZ3 2542 aaKnown RBP19.33■□□□□ 0.68
CLN3-207ENST00000395653 IGKV3D-15A0A087WSY6 115 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 A0A087WUJ7 227 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 CXCR6O00574 342 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 GSTA4O15217 222 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 AHSA1O95433 338 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 CPOXP36551 454 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 MNAT1P51948 309 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 CEACAM7Q14002 265 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 ENTPD8Q5MY95 495 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 CARM1Q86X55 608 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 ZNF610Q8N9Z0 462 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 NAA11Q9BSU3 229 aaPredicted RBP19.33■□□□□ 0.68
CLN3-207ENST00000395653 TAPBPLQ9BX59 468 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 KCNN3Q9UGI6 736 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 SH3GLB1Q9Y371 365 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 PKDREJQ9NTG1 2253 aa19.33■□□□□ 0.68
CLN3-207ENST00000395653 ZNF716A6NP11 495 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 ZNF814B7Z6K7 855 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 CD79BP40259 229 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 SLC16A1P53985 500 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 CDH12P55289 794 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 SELENOWP63302 87 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 OR7A5Q15622 319 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 STK32CQ86UX6 486 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 MFSD8Q8NHS3 518 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 BCAS4Q8TDM0 211 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 ADAMTS16Q8TE57 1224 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 ADA2Q9NZK5 511 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 EMC3Q9P0I2 261 aa19.32■□□□□ 0.68
CLN3-207ENST00000395653 IGKV1D-42A0A075B6H8 117 aa19.31■□□□□ 0.68
CLN3-207ENST00000395653 CHP2O43745 196 aa19.31■□□□□ 0.68
CLN3-207ENST00000395653 KIR2DL3P43628 341 aa19.31■□□□□ 0.68
CLN3-207ENST00000395653 C16orf89Q6UX73 402 aa19.31■□□□□ 0.68
CLN3-207ENST00000395653 NUFIP2Q7Z417 695 aaKnown RBP19.31■□□□□ 0.68
CLN3-207ENST00000395653 GDF7Q7Z4P5 450 aa19.31■□□□□ 0.68
CLN3-207ENST00000395653 CCDC103Q8IW40 242 aa19.31■□□□□ 0.68
CLN3-207ENST00000395653 RNF217Q8TC41 542 aa19.31■□□□□ 0.68
CLN3-207ENST00000395653 LZICQ8WZA0 190 aa19.31■□□□□ 0.68
CLN3-207ENST00000395653 C14orf79Q96F83 325 aa19.31■□□□□ 0.68
CLN3-207ENST00000395653 ZNF300Q96RE9 604 aaPredicted RBP19.31■□□□□ 0.68
CLN3-207ENST00000395653 PTDSS2Q9BVG9 487 aa19.31■□□□□ 0.68
CLN3-207ENST00000395653 C12orf49Q9H741 205 aa19.31■□□□□ 0.68
CLN3-207ENST00000395653 ADPRHL2Q9NX46 363 aa19.31■□□□□ 0.68
CLN3-207ENST00000395653 CPSF4LA6NMK7 179 aaKnown RBP19.3■□□□□ 0.68
CLN3-207ENST00000395653 FTCDNL1E5RQL4 147 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 GPR171O14626 319 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 OR2T1O43869 369 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 RAMP1O60894 148 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 FZD7O75084 574 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 POU2F1P14859 743 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 GGT1P19440 569 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 MXRA7P84157 204 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 SLC25A3Q00325 362 aa19.3■□□□□ 0.68
CLN3-207ENST00000395653 SNTB1Q13884 538 aaKnown RBP19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms