RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 FBXL3Q9UKT7 428 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 SIRT4Q9Y6E7 314 aaPredicted RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 CACNA1EQ15878 2313 aa10.27□□□□□ -0.76
CUX1-204ENST00000393824 GOLGA4Q13439 2230 aaKnown RBP10.27□□□□□ -0.76
CUX1-204ENST00000393824 CELSR3Q9NYQ7 3312 aa10.27□□□□□ -0.76
CUX1-204ENST00000393824 NDUFS6O75380 124 aaKnown RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 AQP8O94778 261 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 HIST1H2ABP04908 130 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 ZNF3P17036 446 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 HTR1FP30939 366 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 E2F1Q01094 437 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 GK2Q14410 553 aaPredicted RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 TRAM1Q15629 374 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 ZNF124Q15973 351 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 ELFN2Q5R3F8 820 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 HIST3H2AQ7L7L0 130 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 NRROSQ86YC3 692 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 PATE1Q8WXA2 126 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 HIST1H2ACQ93077 130 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 ELP4Q96EB1 424 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 WDR92Q96MX6 357 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 NKX6-2Q9C056 277 aaPredicted RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 CA10Q9NS85 328 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 MED17Q9NVC6 651 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 NKIRAS2Q9NYR9 191 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 FLVCR2Q9UPI3 526 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 PCDHGA9Q9Y5G4 932 aaKnown RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 DMXL1Q9Y485 3027 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 SPTY2D1-AS1A0A0U1RR47 76 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 C17orf113A0A1B0GUU1 675 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 A0A1W2PR77 199 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 NAP1L6A6NFF2 107 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 PGRMC2O15173 223 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 GBAP04062 536 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 KLK1P06870 262 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 IL3P08700 152 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 SAGP10523 405 aaPredicted RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 SELLP14151 372 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 CSNK1EP49674 416 aaKnown RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 VEGFCP49767 419 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 CCR8P51685 355 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 CCR9P51686 369 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 C1orf61Q13536 156 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 TNFAIP8L2Q6P589 184 aaPredicted RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 NXPE4Q6UWF7 544 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 PXKQ7Z7A4 578 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 C2orf73Q8N5S3 287 aaPredicted RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 SETD7Q8WTS6 366 aaKnown RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 NSMAFQ92636 917 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 ZNF514Q96K75 400 aaPredicted RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 IL17FQ96PD4 163 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 ISG20L2Q9H9L3 353 aaKnown RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 EXOSC3Q9NQT5 275 aaKnown RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 FSCN3Q9NQT6 498 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 TEX10Q9NXF1 929 aaPredicted RBP10.27□□□□□ -0.77
CUX1-204ENST00000393824 MED11Q9P086 117 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 ABRACLQ9P1F3 81 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 HS3ST3A1Q9Y663 406 aa10.27□□□□□ -0.77
CUX1-204ENST00000393824 TRBV23OR9-2A0A075B6M9 112 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 GSAPA4D1B5 854 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 SURF4O15260 269 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 SC5DO75845 299 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 RASGRP1O95267 797 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 C1orf105O95561 183 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 TGFB1P01137 390 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 CD27P26842 260 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 IFNGR2P38484 337 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 GDNFP39905 211 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 FRKP42685 505 aaPredicted RBP10.26□□□□□ -0.77
CUX1-204ENST00000393824 CAPZA2P47755 286 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 PSMA6P60900 246 aaKnown RBP10.26□□□□□ -0.77
CUX1-204ENST00000393824 RPS26P62854 115 aaKnown RBP10.26□□□□□ -0.77
CUX1-204ENST00000393824 TSPAN31Q12999 210 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 HFEQ30201 348 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 SLC25A35Q3KQZ1 300 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 ZNF660Q6AZW8 331 aaPredicted RBP10.26□□□□□ -0.77
CUX1-204ENST00000393824 OR5M10Q6IEU7 315 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 CDC73Q6P1J9 531 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 GSG1LQ6UXU4 331 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 TEX19Q8NA77 164 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 ZNF480Q8WV37 535 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 PRRC1Q96M27 445 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 INSM2Q96T92 566 aaPredicted RBP10.26□□□□□ -0.77
CUX1-204ENST00000393824 TIMP4Q99727 224 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 UTP23Q9BRU9 249 aaKnown RBP10.26□□□□□ -0.77
CUX1-204ENST00000393824 SLC25A32Q9H2D1 315 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 PLEKHA1Q9HB21 404 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 HRASLSQ9HDD0 168 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 TAS2R5Q9NYW4 299 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 NTMQ9P121 344 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 CTSFQ9UBX1 484 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 MLXQ9UH92 298 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 ASPMQ8IZT6 3477 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 THADAQ6YHU6 1953 aa10.26□□□□□ -0.77
CUX1-204ENST00000393824 A0A1B0GW55 424 aa10.25□□□□□ -0.77
CUX1-204ENST00000393824 SNRPGP15A8MWD9 76 aa10.25□□□□□ -0.77
CUX1-204ENST00000393824 PRR23D1E9PI22 279 aaPredicted RBP10.25□□□□□ -0.77
CUX1-204ENST00000393824 HMGN4O00479 90 aa10.25□□□□□ -0.77
CUX1-204ENST00000393824 GNB5O14775 395 aa10.25□□□□□ -0.77
CUX1-204ENST00000393824 PLPP2O43688 288 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms