RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 ALKBH3Q96Q83 286 aaPredicted RBP8.67□□□□□ -1.02
PTPRA-204ENST00000380393 URM1Q9BTM9 101 aaKnown RBP8.67□□□□□ -1.02
PTPRA-204ENST00000380393 SF3B5Q9BWJ5 86 aaKnown RBP8.67□□□□□ -1.02
PTPRA-204ENST00000380393 COLEC11Q9BWP8 271 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 MMP26Q9NRE1 261 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 HEBP1Q9NRV9 189 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 ZNF223Q9UK11 482 aaPredicted RBP8.67□□□□□ -1.02
PTPRA-204ENST00000380393 RCE1Q9Y256 329 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 AGTR2P50052 363 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 TPBGQ13641 420 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 PAFAH1B3Q15102 231 aaKnown RBP8.67□□□□□ -1.02
PTPRA-204ENST00000380393 C2orf68Q2NKX9 166 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 AWAT1Q58HT5 328 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 PRAMEF14Q5SWL7 426 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 DCAF12L2Q5VW00 463 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 ZDHHC20Q5W0Z9 365 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 FBXO42Q6P3S6 717 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 ZNF813Q6ZN06 617 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 Q6ZSR9 355 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 PPP1R3BQ86XI6 285 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 HIST3H2BBQ8N257 126 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 FBXO39Q8N4B4 442 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 C2CD4AQ8NCU7 369 aaPredicted RBP8.67□□□□□ -1.02
PTPRA-204ENST00000380393 ZNF296Q8WUU4 475 aaPredicted RBP8.67□□□□□ -1.02
PTPRA-204ENST00000380393 THAP4Q8WY91 577 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 THRSPQ92748 146 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 WNT8BQ93098 351 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 DTD2Q96FN9 168 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 NUDT11Q96G61 164 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 IP6K3Q96PC2 410 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 FAIM2Q9BWQ8 316 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 DPY30Q9C005 99 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 SAGE1Q9NXZ1 904 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 FBXL4Q9UKA2 621 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 SHROOM3Q8TF72 1996 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 A0A1W2PN81 502 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 TBC1D3BA6NDS4 549 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 F5H0A9 414 aaPredicted RBP8.67□□□□□ -1.02
PTPRA-204ENST00000380393 GABRPO00591 440 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 ABLIM3O94929 683 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 IGHEP01854 428 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 SERPIND1P05546 499 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 CD82P27701 267 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 CTHP32929 405 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 CHRNA7P36544 502 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 GZMMP51124 257 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 LSM11P83369 360 aaKnown RBP eCLIP8.67□□□□□ -1.022e-6■■■■□ 23.2
PTPRA-204ENST00000380393 OR5I1Q13606 314 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 KLF9Q13886 244 aaPredicted RBP8.67□□□□□ -1.02
PTPRA-204ENST00000380393 GTF2H2Q13888 395 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 CHRFAM7AQ494W8 412 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 DUSP28Q4G0W2 176 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 TBC1D3GQ6DHY5 549 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 GTF2H2CQ6P1K8 395 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 C1QL4Q86Z23 238 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 GCNT2Q8N0V5 402 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 SDR9C7Q8NEX9 313 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 SEMA6DQ8NFY4 1073 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 FIBINQ8TAL6 211 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 THEM6Q8WUY1 208 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 MRPS31Q92665 395 aaKnown RBP8.67□□□□□ -1.02
PTPRA-204ENST00000380393 LMF1Q96S06 567 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 S100A13Q99584 98 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 C16orf70Q9BSU1 422 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 C20orf24Q9BUV8 137 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 DUSP16Q9BY84 665 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 SRMSQ9H3Y6 488 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 TAS2R5Q9NYW4 299 aa8.67□□□□□ -1.02
PTPRA-204ENST00000380393 IGKV6D-21A0A0A0MT36 114 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 CPED1A4D0V7 1026 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 NPIPA7E9PJI5 369 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 H3BRB1 525 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 WNT9AO14904 365 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 BCL2L11O43521 198 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 HLA-DPB1P04440 258 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 MMP3P08254 477 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 NPIPA8P0DM63 369 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 HSD3B1P14060 373 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 ACSM1Q08AH1 577 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 ENPP2Q13822 863 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 OR4D1Q15615 310 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 NDUFA9Q16795 377 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 CRB2Q5IJ48 1285 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 KIAA1161Q6NSJ0 714 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 JMJD6Q6NYC1 403 aaPredicted RBP8.66□□□□□ -1.02
PTPRA-204ENST00000380393 FAM199XQ6PEV8 388 aaPredicted RBP8.66□□□□□ -1.02
PTPRA-204ENST00000380393 DOK6Q6PKX4 331 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 C16orf59Q7L2K0 433 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 CXXC5Q7LFL8 322 aaKnown RBP8.66□□□□□ -1.02
PTPRA-204ENST00000380393 GOLGA7Q7Z5G4 137 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 IGSF21Q96ID5 467 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 ARHGAP9Q9BRR9 750 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 ZNF2Q9BSG1 426 aaPredicted RBP8.66□□□□□ -1.02
PTPRA-204ENST00000380393 METTL8Q9H825 291 aaKnown RBP8.66□□□□□ -1.02
PTPRA-204ENST00000380393 TUBA4BQ9H853 241 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 RHOFQ9HBH0 211 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 KRCC1Q9NPI7 259 aaPredicted RBP8.66□□□□□ -1.02
PTPRA-204ENST00000380393 GPR173Q9NS66 373 aa8.66□□□□□ -1.02
PTPRA-204ENST00000380393 MARCH4Q9P2E8 410 aaPredicted RBP8.66□□□□□ -1.02
PTPRA-204ENST00000380393 GALPQ9UBC7 116 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms