RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 NUDT1P36639 197 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 ACTA2P62736 377 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 ACTG2P63267 376 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 CD83Q01151 205 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 GGTLC2Q14390 218 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 PON3Q15166 354 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 CPEB4Q17RY0 729 aaKnown RBP eCLIP19.95■□□□□ 0.78
SHMT1-202ENST00000352886 PAMR1Q6UXH9 720 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 SLC35F2Q8IXU6 374 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 TRMT10AQ8TBZ6 339 aaKnown RBP19.95■□□□□ 0.78
SHMT1-202ENST00000352886 CCDC86Q9H6F5 360 aaKnown RBP19.95■□□□□ 0.78
SHMT1-202ENST00000352886 ZNF337Q9Y3M9 751 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 CHURC1-FNTBB4DL54 471 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 RGS13O14921 159 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 CLPSP04118 112 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 HLA-DMAP28067 261 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 RBMS1P29558 406 aaKnown RBP19.95■□□□□ 0.78
SHMT1-202ENST00000352886 FNTBP49356 437 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 COL13A1Q5TAT6 717 aaPredicted RBP19.95■□□□□ 0.78
SHMT1-202ENST00000352886 SNX33Q8WV41 574 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 THAP4Q8WY91 577 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 ZNF285Q96NJ3 590 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 MAU2Q9Y6X3 613 aa19.95■□□□□ 0.78
SHMT1-202ENST00000352886 IGHV5-51A0A0C4DH38 117 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 RAB3BP20337 219 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 NPR2P20594 1047 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 ALAS2P22557 587 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 TCEA1P23193 301 aaKnown RBP19.94■□□□□ 0.78
SHMT1-202ENST00000352886 GDI2P50395 445 aaKnown RBP19.94■□□□□ 0.78
SHMT1-202ENST00000352886 CLDN20P56880 219 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 CDK5R1Q15078 307 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 KLHL26Q53HC5 615 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 C6orf183Q5T699 404 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 SYT13Q7L8C5 426 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 SYS1Q8N2H4 156 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 NPEPL1Q8NDH3 523 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 ZPLD1Q8TCW7 415 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 RASD2Q96D21 266 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 SMIM19Q96E16 107 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 ALG5Q9Y673 324 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 CACNA1IQ9P0X4 2223 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 C17orf105B2RV13 164 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 OGG1O15527 345 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 LANCL1O43813 399 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 OR7A10O76100 309 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 PITPNBP48739 271 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 GBX2P52951 348 aaPredicted RBP19.94■□□□□ 0.78
SHMT1-202ENST00000352886 ERVK-25P63136 954 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 LGALS3BPQ08380 585 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 MED25Q71SY5 747 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 TSTD1Q8NFU3 115 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 CLIP3Q96DZ5 547 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 SPRTNQ9H040 489 aaPredicted RBP19.94■□□□□ 0.78
SHMT1-202ENST00000352886 NRIP3Q9NQ35 241 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 PRODH2Q9UF12 536 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 GNG8Q9UK08 70 aa19.94■□□□□ 0.78
SHMT1-202ENST00000352886 EML5Q05BV3 1969 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 OR6C68A6NDL8 312 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 SELENOFO60613 162 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 SERPINI2O75830 405 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 SERPINA3P01011 423 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 TFPIP10646 304 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 CD1CP29017 333 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 CLPPQ16740 277 aaPredicted RBP19.93■□□□□ 0.78
SHMT1-202ENST00000352886 CDONQ4KMG0 1287 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 ASB18Q6ZVZ8 466 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 GKN2Q86XP6 184 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 TEX19Q8NA77 164 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 ZSCAN1Q8NBB4 408 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 OR6K6Q8NGW6 343 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 OR14A16Q8NHC5 309 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 THAP7Q9BT49 309 aaPredicted RBP19.93■□□□□ 0.78
SHMT1-202ENST00000352886 IGKV1D-42A0A075B6H8 117 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 IGHV1OR15-9A0A0B4J2B8 117 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 FAM172BPA6NC97 362 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 LILRA5A6NI73 299 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 NME1P15531 152 aaKnown RBP19.93■□□□□ 0.78
SHMT1-202ENST00000352886 SPI1P17947 270 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 MAOBP27338 520 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 DIO1P49895 249 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 SIRPAP78324 504 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 CD226Q15762 336 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 SYT9Q86SS6 491 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 RFT1Q96AA3 541 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 MARVELD1Q9BSK0 173 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 COPS3Q9UNS2 423 aa19.93■□□□□ 0.78
SHMT1-202ENST00000352886 ELOA3DA6NLF2 546 aaPredicted RBP19.92■□□□□ 0.78
SHMT1-202ENST00000352886 ARPC3O15145 178 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 HPGDP15428 266 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 CCR4P51679 360 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 RPS4XP62701 263 aaKnown RBP19.92■□□□□ 0.78
SHMT1-202ENST00000352886 ELOA3BQ3SY89 546 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 ZNF321PQ8N8H1 164 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 ELOA3Q8NG57 546 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 HSPA12BQ96MM6 686 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 DDOQ99489 341 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 LDHAL6BQ9BYZ2 381 aaPredicted RBP19.92■□□□□ 0.78
SHMT1-202ENST00000352886 PDE7BQ9NP56 450 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 ACOXLQ9NUZ1 547 aa19.92■□□□□ 0.78
SHMT1-202ENST00000352886 FZD7O75084 574 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms