RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 LY6G6FQ5SQ64 297 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 UNQ9370/PRO34162Q6UXP9 181 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 TMEM64Q6YI46 380 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 OR2W3Q7Z3T1 314 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 DMBX1Q8NFW5 382 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 OR1M1Q8NGA1 313 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 OR52L1Q8NGH7 329 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 OR4C16Q8NGL9 310 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 OR5AR1Q8NGP9 310 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 OR1S2Q8NGQ3 325 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 C1orf216Q8TAB5 229 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 NANPQ8TBE9 248 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 SETD7Q8WTS6 366 aaKnown RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 ARSGQ96EG1 525 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 TRMT2BQ96GJ1 504 aaKnown RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 PAWRQ96IZ0 340 aaKnown RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 BBS4Q96RK4 519 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 VN1R3Q9BXE9 311 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 IL21RQ9HBE5 538 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 EPHA6Q9UF33 1036 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 NOSIPQ9Y314 301 aaKnown RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 PCYT1BQ9Y5K3 369 aaPredicted RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 MYOFQ9NZM1 2061 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 TRAV27A0A087WT01 109 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 TRBV2A0A0J9YWF9 115 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 H7BY64 318 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 K7ESM1 405 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 ACOT7O00154 380 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 NRG2O14511 850 aaPredicted RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 SULT1B1O43704 296 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 LCMT2O60294 686 aaKnown RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 SLC25A12O75746 678 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 AKR7A3O95154 331 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 LYPD3O95274 346 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 F12P00748 615 aaPredicted RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 CLTBP09497 229 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 CKBP12277 381 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 ITGB8P26012 769 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 HTR2AP28223 471 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 PRKAR1BP31321 381 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 PSMB10P40306 273 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 MC3RP41968 323 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 LUMP51884 338 aaPredicted RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 POLR2LP62875 67 aaKnown RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 PPIAP62937 165 aaKnown RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 SIRPAP78324 504 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 DCDP81605 110 aaKnown RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 NUMA1Q14980 2115 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 RBMS2Q15434 407 aaKnown RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 DHRS7BQ6IAN0 325 aaPredicted RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 JMJD6Q6NYC1 403 aaPredicted RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 ZNF836Q6ZNA1 936 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 FRRS1Q6ZNA5 592 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 ZNF600Q6ZNG1 722 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 DNM1P46Q6ZS02 220 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 TRAPPC5Q8IUR0 188 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 ZNF547Q8IVP9 402 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 ZFP82Q8N141 532 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 VN1R2Q8NFZ6 395 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 OR14A16Q8NHC5 309 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 SFXN5Q8TD22 340 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 GLYATL2Q8WU03 294 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 RGP1Q92546 391 aaPredicted RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 HAVCR1Q96D42 359 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 ZMYND19Q96E35 227 aaPredicted RBP6.25□□□□□ -1.41
VPS39-202ENST00000348544 PRAP1Q96NZ9 151 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 CD180Q99467 661 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 MACROD1Q9BQ69 325 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 OR2AG1Q9H205 316 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 SLC22A11Q9NSA0 550 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 CLDND1Q9NY35 253 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 TINAGQ9UJW2 476 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 PCDHB10Q9UN67 800 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 ZNF337Q9Y3M9 751 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 OR10H1Q9Y4A9 318 aa6.25□□□□□ -1.41
VPS39-202ENST00000348544 MEX3AA1L020 520 aaKnown RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 FAM86C2PA6NEL3 165 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 IDSB3KWA1 339 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 KPNA3O00505 521 aaPredicted RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 ADAMTS4O75173 837 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 LEFTY1O75610 366 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 OLFM2O95897 454 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 CRYBA1P05813 215 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 FABP1P07148 127 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 BDKRB2P30411 391 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 NTSP30990 170 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 NAA10P41227 235 aaPredicted RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 ARFIP1P53367 373 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 GMFBP60983 142 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 SRSF3P84103 164 aaKnown RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 REEP5Q00765 189 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 MPPED2Q15777 294 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 OR4C11Q6IEV9 310 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 SLC16A13Q7RTY0 426 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 TMPRSS9Q7Z410 1059 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 ZNF546Q86UE3 836 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 C17orf64Q86WR6 236 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 C12orf45Q8N5I9 185 aaPredicted RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 OR51L1Q8NGJ5 315 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 DUSP19Q8WTR2 217 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms