RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ZNF3P17036 446 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 NFYAP23511 347 aaPredicted RBP20.61■□□□□ 0.89
TRIM28-202ENST00000341753 UBE2MP61081 183 aaKnown RBP20.61■□□□□ 0.89
TRIM28-202ENST00000341753 SIGLEC14Q08ET2 396 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 MELKQ14680 651 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 TRMT12Q53H54 448 aaKnown RBP20.61■□□□□ 0.89
TRIM28-202ENST00000341753 TANGO2Q6ICL3 276 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 FIGNL1Q6PIW4 674 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 TEX19Q8NA77 164 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 OR52E2Q8NGJ4 325 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 SMIM19Q96E16 107 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 CAPN10Q9HC96 672 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 ARL6IP5O75915 188 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 CA3P07451 260 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 LAMP2P13473 410 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 RGS7BPQ6MZT1 257 aaPredicted RBP20.61■□□□□ 0.89
TRIM28-202ENST00000341753 TTLQ8NG68 377 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 MS4A4EQ96PG1 132 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 DMRTA2Q96SC8 542 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 GPR174Q9BXC1 333 aa20.61■□□□□ 0.89
TRIM28-202ENST00000341753 A0A1B0GUH1 482 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 SLC22A23A1A5C7 686 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 ANKRD61A6NGH8 418 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 LYPD3O95274 346 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 GRPRP30550 384 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 CDK20Q8IZL9 346 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 SNX33Q8WV41 574 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 DUXAA6NLW8 204 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 MCRIP1C9JLW8 97 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 UCHL1P09936 223 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 FAM69AQ5T7M9 428 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 NRROSQ86YC3 692 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 RAB42Q8N4Z0 105 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 ZNF614Q8N883 585 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 NRIP3Q9NQ35 241 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 NANSQ9NR45 359 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 NTMQ9P121 344 aa20.6■□□□□ 0.89
TRIM28-202ENST00000341753 H3BUI4 141 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 PIN1P1O15428 100 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 KRT33AO76009 404 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 SERPINA3P01011 423 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 SIRPAP78324 504 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 GLDNQ6ZMI3 551 aaPredicted RBP20.59■□□□□ 0.89
TRIM28-202ENST00000341753 ZNRF4Q8WWF5 429 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 TMEM74BQ9NUR3 256 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 COPS3Q9UNS2 423 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 CA5BQ9Y2D0 317 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 MED31Q9Y3C7 131 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 CTDSPLO15194 276 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 SUSD5O60279 629 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 ARFIP1P53367 373 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 HLXQ14774 488 aaPredicted RBP20.59■□□□□ 0.89
TRIM28-202ENST00000341753 MTSS1LQ765P7 747 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 LRRC25Q8N386 305 aaPredicted RBP20.59■□□□□ 0.89
TRIM28-202ENST00000341753 HDDC3Q8N4P3 179 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 OR52E1Q8NGJ3 308 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 ZCCHC10Q8TBK6 192 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 SHARPINQ9H0F6 387 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 KLHL9Q9P2J3 617 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 FBXL2Q9UKC9 423 aa20.59■□□□□ 0.89
TRIM28-202ENST00000341753 TOR1AO14656 332 aa20.58■□□□□ 0.89
TRIM28-202ENST00000341753 FMO6PO60774 539 aa20.58■□□□□ 0.89
TRIM28-202ENST00000341753 PRAF2O60831 178 aa20.58■□□□□ 0.89
TRIM28-202ENST00000341753 DRD3P35462 400 aa20.58■□□□□ 0.89
TRIM28-202ENST00000341753 C2orf68Q2NKX9 166 aa20.58■□□□□ 0.89
TRIM28-202ENST00000341753 OR2L3Q8NG85 312 aa20.58■□□□□ 0.89
TRIM28-202ENST00000341753 OR52H1Q8NGJ2 320 aa20.58■□□□□ 0.89
TRIM28-202ENST00000341753 SMARCD2Q92925 531 aa20.58■□□□□ 0.89
TRIM28-202ENST00000341753 PTCHD1Q96NR3 888 aa20.58■□□□□ 0.89
TRIM28-202ENST00000341753 GINS4Q9BRT9 223 aa20.58■□□□□ 0.89
TRIM28-202ENST00000341753 SESN1Q9Y6P5 492 aa20.58■□□□□ 0.89
TRIM28-202ENST00000341753 CEP290O15078 2479 aa20.58■□□□□ 0.88
TRIM28-202ENST00000341753 PAK4O96013 591 aaPredicted RBP20.58■□□□□ 0.88
TRIM28-202ENST00000341753 ZNF888P0CJ79 500 aaPredicted RBP20.58■□□□□ 0.88
TRIM28-202ENST00000341753 SRMP19623 302 aa20.58■□□□□ 0.88
TRIM28-202ENST00000341753 PEBP1P30086 187 aaKnown RBP20.58■□□□□ 0.88
TRIM28-202ENST00000341753 RPE65Q16518 533 aa20.58■□□□□ 0.88
TRIM28-202ENST00000341753 ARHGAP11BQ3KRB8 267 aa20.58■□□□□ 0.88
TRIM28-202ENST00000341753 AMZ1Q400G9 498 aa20.58■□□□□ 0.88
TRIM28-202ENST00000341753 TMEM52BQ4KMG9 183 aa20.58■□□□□ 0.88
TRIM28-202ENST00000341753 OR5M1Q8NGP8 315 aa20.58■□□□□ 0.88
TRIM28-202ENST00000341753 FCAMRQ8WWV6 532 aa20.58■□□□□ 0.88
TRIM28-202ENST00000341753 ZCCHC4Q9H5U6 513 aa20.58■□□□□ 0.88
TRIM28-202ENST00000341753 IL21RQ9HBE5 538 aa20.58■□□□□ 0.88
TRIM28-202ENST00000341753 ING1Q9UK53 422 aaPredicted RBP20.58■□□□□ 0.88
TRIM28-202ENST00000341753 PRUNE2Q8WUY3 3088 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 FXYD6-FXYD2A0A087WZ82 144 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 ANXA2P2A6NMY6 339 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 H3BSH0 61 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 OGG1O15527 345 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 VASPP50552 380 aaPredicted RBP20.57■□□□□ 0.88
TRIM28-202ENST00000341753 DUSP8Q13202 625 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 EIPR1Q53HC9 387 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 BAIAP2L2Q6UXY1 529 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 TMEFF1Q8IYR6 380 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 FAM71CQ8NEG0 241 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 C1orf216Q8TAB5 229 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 C10orf90Q96M02 699 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 FXYD6Q9H0Q3 95 aa20.57■□□□□ 0.88
TRIM28-202ENST00000341753 TTYH1Q9H313 450 aaPredicted RBP20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms