RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 TMEM43Q9BTV4 400 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 DDX31Q9H8H2 851 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SPHK1Q9NYA1 384 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 MUTYHQ9UIF7 546 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 DCNP07585 359 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 HKR1P10072 659 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 GPD1P21695 349 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 EPHA2P29317 976 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CSNK2A1P68400 391 aaPredicted RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CST9LP1Q5W188 147 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TFAP2EQ6VUC0 442 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 IL34Q6ZMJ4 242 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CSNK2A3Q8NEV1 391 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SPPL3Q8TCT6 385 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 BRIX1Q8TDN6 353 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 BMP4P12644 408 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 RPL34P49207 117 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 RAB35Q15286 201 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 DEFB115Q30KQ5 88 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TTLQ8NG68 377 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CYB5D2Q8WUJ1 264 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 MALSU1Q96EH3 234 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SORCS2Q96PQ0 1159 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PCBD2Q9H0N5 130 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CYSLTR2Q9NS75 346 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR6C76A6NM76 312 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR2A4O95047 310 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 IFNA2P01563 188 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 IGHV3-13P01766 116 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 IGHV3-7P01780 117 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 H2BFMP0C1H6 154 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ANXA2RQ3ZCQ2 193 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 NKAIN2Q5VXU1 208 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SLC16A9Q7RTY1 509 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR5M8Q8NGP6 311 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR2A7Q96R45 310 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 POTEKPQ9BYX7 375 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 GEMIN2O14893 280 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 FOLR2P14207 255 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CPMP14384 443 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PCSK1P29120 753 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SERPINA4P29622 427 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 HPCAL1P37235 193 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CCR4P51679 360 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 VWA2Q5GFL6 755 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ANKRD16Q6P6B7 361 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 LAPTM4BQ86VI4 370 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 NCDNQ9UBB6 729 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PUS1Q9Y606 427 aaKnown RBP eCLIP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 C17orf113A0A1B0GUU1 675 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ICAM1P05362 532 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM107Q6UX40 140 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TRAM1L1Q8N609 369 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 MFSD8Q8NHS3 518 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PANX1Q96RD7 426 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 WASF3Q9UPY6 502 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 LIPT1Q9Y234 373 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SLCO1B1Q9Y6L6 691 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SPG11Q96JI7 2443 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 A0A1W2PQH9 124 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MATN3O15232 486 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CACNG3O60359 315 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 PGAM2P15259 253 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 HLA-GP17693 338 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ACTBP60709 375 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ACTG1P63261 375 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 FOXK1P85037 733 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 HEPACAMQ14CZ8 416 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 FCN2Q15485 313 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CPOQ8IVL8 374 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR4K1Q8NGD4 311 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SP110Q9HB58 689 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 IL17BQ9UHF5 180 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 LOC390937A0A1W2PQ73 354 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SLC25A14O95258 325 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 GABRR1P24046 479 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MC2RQ01718 297 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 EMX1Q04741 257 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR52B4Q8NGK2 314 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 GGHQ92820 318 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 YIPF5Q969M3 257 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 RASD2Q96D21 266 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 OR11A1Q9GZK7 315 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 DPAGT1Q9H3H5 408 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 LOC285095A0A1B0GVY8 99 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 PRORSD1PA6NEY8 169 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SLC22A20A6NK97 555 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 FBXO24O75426 580 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ADH1AP07327 375 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SMIM18P0DKX4 95 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 MPIP34949 423 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF124Q15973 351 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 LIPIQ6XZB0 460 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SAMD12Q8N8I0 201 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 CMBLQ96DG6 245 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM38AQ9H6F2 299 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 PFKMP08237 780 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 TACSTD2P09758 323 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 SOX3P41225 446 aa3.3□□□□□ -1.88
SYNE1-201ENST00000341594 NXNL2Q5VZ03 156 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms