RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ADGRG3Q86Y34 549 aa13.39□□□□□ -0.27
COL7A1-201ENST00000328333 ANKRD30BLA7E2S9 258 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 PDZK1IP1Q13113 114 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 ZNF331Q9NQX6 463 aaPredicted RBP13.38□□□□□ -0.27
COL7A1-201ENST00000328333 MOKQ9UQ07 419 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 Q9Y3F1 56 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 NPFFR2Q9Y5X5 522 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 DOCK2Q92608 1830 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 FBXO24O75426 580 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 POU3F3P20264 500 aaPredicted RBP13.38□□□□□ -0.27
COL7A1-201ENST00000328333 GGT5P36269 586 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 CAMK2BQ13554 666 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 DOC2AQ14183 400 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 SFXN4Q6P4A7 337 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 MDGA2Q7Z553 956 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 TECPR1Q7Z6L1 1165 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 LSMEM2Q8N112 164 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 ZNF561Q8N587 486 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 HRASLS2Q9NWW9 162 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 SPHK1Q9NYA1 384 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 RCE1Q9Y256 329 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 SEC13P55735 322 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 TEKQ02763 1124 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 SYT6Q5T7P8 510 aaPredicted RBP13.38□□□□□ -0.27
COL7A1-201ENST00000328333 PEBP4Q96S96 227 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 NTMT1Q9BV86 223 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 TAF9BQ9HBM6 251 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 POLR2AP24928 1970 aaKnown RBP13.38□□□□□ -0.27
COL7A1-201ENST00000328333 OGFOD3Q6PK18 319 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 BTNL8Q6UX41 500 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 TMEM239Q8WW34 195 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 SCAMP1O15126 338 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 FABP7O15540 132 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 PPP1R3DO95685 299 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 HTR4Q13639 388 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 NADSYN1Q6IA69 706 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 OR4C5Q8NGB2 326 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 OR9Q2Q8NGE9 314 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 NSUN5Q96P11 429 aaKnown RBP13.38□□□□□ -0.27
COL7A1-201ENST00000328333 GAS2L1Q99501 681 aaPredicted RBP13.38□□□□□ -0.27
COL7A1-201ENST00000328333 MUTYHQ9UIF7 546 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 RREB1Q92766 1687 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 MYOCOSA0A1B0GUC4 107 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 CSF2RAP15509 400 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 ETV3P41162 512 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 SEC61A1P61619 476 aaKnown RBP13.38□□□□□ -0.27
COL7A1-201ENST00000328333 OR8J2Q8NGG1 315 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 ZNF516Q92618 1163 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 SORT1Q99523 831 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 FBRSL1Q9HCM7 1045 aaKnown RBP13.38□□□□□ -0.27
COL7A1-201ENST00000328333 GLSO94925 669 aaPredicted RBP13.38□□□□□ -0.27
COL7A1-201ENST00000328333 DUSP3P51452 185 aaPredicted RBP13.38□□□□□ -0.27
COL7A1-201ENST00000328333 Q499Y3 187 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 RNLSQ5VYX0 342 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 ZNF620Q6ZNG0 422 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 PRSS35Q8N3Z0 413 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 OR52B6Q8NGF0 335 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 DHRS9Q9BPW9 319 aa13.38□□□□□ -0.27
COL7A1-201ENST00000328333 HIDE1A8MVS5 230 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 MMP7P09237 267 aaPredicted RBP13.37□□□□□ -0.27
COL7A1-201ENST00000328333 JUNBP17275 347 aaPredicted RBP13.37□□□□□ -0.27
COL7A1-201ENST00000328333 ANXA7P20073 488 aaKnown RBP13.37□□□□□ -0.27
COL7A1-201ENST00000328333 GTDC1Q4AE62 458 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 CLRN3Q8NCR9 226 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 NRG4Q8WWG1 115 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 PSMF1Q92530 271 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 RNF24Q9Y225 148 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 SLC45A1Q9Y2W3 748 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 GPR32O75388 356 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 RAF1P04049 648 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 LAMP1P11279 417 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 AADACP22760 399 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 CHADLQ6NUI6 762 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 CMTM2Q8TAZ6 248 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 BPIFA2Q96DR5 249 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 SERINC2Q96SA4 455 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 SLC12A9Q9BXP2 914 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 FOXD2O60548 495 aaPredicted RBP13.37□□□□□ -0.27
COL7A1-201ENST00000328333 LAX1Q8IWV1 398 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 SENP5Q96HI0 755 aaPredicted RBP13.37□□□□□ -0.27
COL7A1-201ENST00000328333 CNIH4Q9P003 139 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 SLC7A7Q9UM01 511 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 ATAD5Q96QE3 1844 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 SLC16A6O15403 523 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 YKT6O15498 198 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 NUDT21O43809 227 aaKnown RBP13.37□□□□□ -0.27
COL7A1-201ENST00000328333 PTGER4P35408 488 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 GATMP50440 423 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 RPE65Q16518 533 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 KIAA0141Q14154 515 aaPredicted RBP13.37□□□□□ -0.27
COL7A1-201ENST00000328333 SCLYQ96I15 445 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 A8MUA0 341 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 SORDQ00796 357 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 NFATC4Q14934 902 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 PGGHGQ32M88 737 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 ADGRF3Q8IZF5 1079 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 HRASLS5Q96KN8 279 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 POFUT1Q9H488 388 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 PCDHAC2Q9Y5I4 1007 aa13.37□□□□□ -0.27
COL7A1-201ENST00000328333 DCDC2BA2VCK2 349 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms