RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 P4HA3Q7Z4N8 544 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 ZSCAN4Q8NAM6 433 aaPredicted RBP10.73□□□□□ -0.69
VPS39-201ENST00000318006 ZNF680Q8NEM1 530 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 ADAMTS18Q8TE60 1221 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 MAP6Q96JE9 813 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 SEMA4GQ9NTN9 838 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 TESQ9UGI8 421 aaKnown RBP10.73□□□□□ -0.69
VPS39-201ENST00000318006 ZNF281Q9Y2X9 895 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 HIDE1A8MVS5 230 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 B4DXG7 233 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 D6RAR5 112 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 K7EPK0 472 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 HMGN2P05204 90 aaKnown RBP10.73□□□□□ -0.69
VPS39-201ENST00000318006 FUT1P19526 365 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 FXYD4P59646 89 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 GALK2Q01415 458 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 GPR176Q14439 515 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 RSU1Q15404 277 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 ZNF322Q6U7Q0 402 aaPredicted RBP10.73□□□□□ -0.69
VPS39-201ENST00000318006 B3GLCTQ6Y288 498 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 GPR155Q7Z3F1 870 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 FAM71E2Q8N5Q1 922 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 OR10Z1Q8NGY1 313 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 TMEM68Q96MH6 324 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 IFT22Q9H7X7 185 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 A8MXE2 369 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 ZNF217O75362 1048 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 ABLIM3O94929 683 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 KCNK2O95069 426 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 C1orf105O95561 183 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 MSR1P21757 451 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 FBLP22087 321 aaKnown RBP10.73□□□□□ -0.69
VPS39-201ENST00000318006 SLC6A11P48066 632 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 ZNF84P51523 738 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 GPLD1P80108 840 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 PLCXD2Q0VAA5 305 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 TMEM41BQ5BJD5 291 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 SOHLH1Q5JUK2 328 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 VASNQ6EMK4 673 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 Q6ZSR9 355 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 KANSL1Q7Z3B3 1105 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 SLC30A7Q8NEW0 376 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 OR8J2Q8NGG1 315 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 LINC01599Q8WXQ3 324 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 SEC22AQ96IW7 307 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 PITX2Q99697 317 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 ST6GALNAC5Q9BVH7 336 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 SLC25A31Q9H0C2 315 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 EGLN3Q9H6Z9 239 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 TMEM100Q9NV29 134 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 ENTPD2Q9Y5L3 495 aa10.73□□□□□ -0.69
VPS39-201ENST00000318006 H3BUI4 141 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 PEX12O00623 359 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 ATG12O94817 140 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 ITGBL1O95965 494 aaPredicted RBP10.72□□□□□ -0.69
VPS39-201ENST00000318006 SERPINA5P05154 406 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 HOXB5P09067 269 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 GIPP09681 153 aaPredicted RBP10.72□□□□□ -0.69
VPS39-201ENST00000318006 CNR1P21554 472 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 RPL34P49207 117 aaKnown RBP10.72□□□□□ -0.69
VPS39-201ENST00000318006 HBA1P69905 142 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 C17orf107Q6ZR85 190 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 NLRP8Q86W28 1048 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 SULF2Q8IWU5 870 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 DNAAF1Q8NEP3 725 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 OR52H1Q8NGJ2 320 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 FAM3CQ92520 227 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 SLCO4A1Q96BD0 722 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 MBOAT4Q96T53 435 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 TPSD1Q9BZJ3 242 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 NRIP3Q9NQ35 241 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 REV1Q9UBZ9 1251 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 GFRA2O00451 464 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 RAD1O60671 282 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 KCNK5O95279 499 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 GYPBP06028 91 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 TMEM225BP0DP42 221 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 CLDN6P56747 220 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 TNFRSF17Q02223 184 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 GRM7Q14831 915 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 UNQ6126/PRO20091Q6UXV3 157 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 EID2Q8N6I1 236 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 CDRT4Q8N9R6 151 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 CREB3L4Q8TEY5 395 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 C14orf79Q96F83 325 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 WDR83Q9BRX9 315 aaKnown RBP10.72□□□□□ -0.69
VPS39-201ENST00000318006 ACKR4Q9NPB9 350 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 USP36Q9P275 1121 aaKnown RBP10.72□□□□□ -0.69
VPS39-201ENST00000318006 ECM29Q5VYK3 1845 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 SCO1O75880 301 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 PLGP00747 810 aaPredicted RBP10.72□□□□□ -0.69
VPS39-201ENST00000318006 CR2P20023 1033 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 NME2P22392 152 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 CCNOP22674 350 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 YIF1BQ5BJH7 314 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 PDSS1Q5T2R2 415 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 KCNIP4Q6PIL6 250 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 TTLL10Q6ZVT0 673 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 ZNF619Q8N2I2 560 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 KDM8Q8N371 416 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 130.8 ms