RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 RFPL4AA6NLU0 287 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 RFPL4AL1F8VTS6 287 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 ZNF749O43361 778 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 PDHA2P29803 388 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 NPBWR1P48145 328 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 PPIAP62937 165 aaKnown RBP12.12□□□□□ -0.47
NUP54-201ENST00000264883 ZNF124Q15973 351 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 LRRC73Q5JTD7 316 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 Q6ZVU0 165 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 MMP21Q8N119 569 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 CHST14Q8NCH0 376 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 C17orf47Q8NEP4 570 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 OR13C5Q8NGS8 318 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 OR2A12Q8NGT7 310 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 LRIG1Q96JA1 1093 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 NDC1Q9BTX1 674 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 TAS2R10Q9NYW0 307 aa12.12□□□□□ -0.47
NUP54-201ENST00000264883 CARHSP1Q9Y2V2 147 aaKnown RBP12.12□□□□□ -0.47
NUP54-201ENST00000264883 TRAV1-2A0A0B4J238 106 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 C17orf113A0A1B0GUU1 675 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 KANTRA0A1W2PQU2 76 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 TRAPPC13A5PLN9 417 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 SYT5O00445 386 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 F12P00748 615 aaPredicted RBP12.11□□□□□ -0.47
NUP54-201ENST00000264883 HEXAP06865 529 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 NR2F1P10589 423 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 BDKRB2P30411 391 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 LUMP51884 338 aaPredicted RBP12.11□□□□□ -0.47
NUP54-201ENST00000264883 TSTA3Q13630 321 aaPredicted RBP12.11□□□□□ -0.47
NUP54-201ENST00000264883 SYPL1Q16563 259 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 PGGHGQ32M88 737 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 C10orf91Q5T1B1 145 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 LILRA6Q6PI73 481 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 SLC36A1Q7Z2H8 476 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 ZNF546Q86UE3 836 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 FAM129CQ86XR2 697 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 OR10H4Q8NGA5 316 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 SUN3Q8TAQ9 357 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 ZNF514Q96K75 400 aaPredicted RBP12.11□□□□□ -0.47
NUP54-201ENST00000264883 PINK1Q9BXM7 581 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 FAM117AQ9C073 453 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 DPEP2Q9H4A9 486 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 TMEM185BQ9H7F4 350 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 ASF1BQ9NVP2 202 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 GHRLQ9UBU3 117 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 ZC3H12DA2A288 527 aaKnown RBP12.11□□□□□ -0.47
NUP54-201ENST00000264883 PLPP1O14494 284 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 ICOSLGO75144 302 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 PCDH8O95206 1070 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 HTR2AP28223 471 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 DCTDP32321 178 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 CSF2RBP32927 897 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 CSRP2Q16527 193 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 RNF212Q495C1 297 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 FCRLBQ6BAA4 426 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 HMGN2P46Q86SG4 172 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 NAA40Q86UY6 237 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 NUDT13Q86X67 352 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 CMTM8Q8IZV2 173 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 LILRA3Q8N6C8 439 aaPredicted RBP12.11□□□□□ -0.47
NUP54-201ENST00000264883 PHOSPHO2Q8TCD6 241 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 ZFPM2Q8WW38 1151 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 LINC00615Q96LM1 132 aaPredicted RBP12.11□□□□□ -0.47
NUP54-201ENST00000264883 CMTM3Q96MX0 182 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 AIF1LQ9BQI0 150 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 TLNRD1Q9H1K6 362 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 SDHAF3Q9NRP4 125 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 KLF15Q9UIH9 416 aa12.11□□□□□ -0.47
NUP54-201ENST00000264883 AK6Q9Y3D8 172 aaKnown RBP12.11□□□□□ -0.47
NUP54-201ENST00000264883 CHD7Q9P2D1 2997 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 DOCK6Q96HP0 2047 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 CHD9Q3L8U1 2897 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 OR14I1A6ND48 311 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 LRIT2A6NDA9 550 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 SLC25A12O75746 678 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 ALPPL2P10696 532 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 TIMP2P16035 220 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 GABRR2P28476 465 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 PBLDP30039 288 aaPredicted RBP12.1□□□□□ -0.47
NUP54-201ENST00000264883 BSGP35613 385 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 ARFIP1P53367 373 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 HSPB3Q12988 150 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 MPPED2Q15777 294 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 SGCAQ16586 387 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 EIF2S3LQ2VIR3 472 aaKnown RBP12.1□□□□□ -0.47
NUP54-201ENST00000264883 RPTNQ6XPR3 784 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 TMEM64Q6YI46 380 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 ADCK2Q7Z695 626 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 GID4Q8IVV7 300 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 SFXN5Q8TD22 340 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 TNFAIP8L1Q8WVP5 186 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 PGLYRP3Q96LB9 341 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 ZNF75AQ96N20 296 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 MS4A8Q9BY19 250 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 WDR13Q9H1Z4 485 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 TMEM138Q9NPI0 162 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 IL20RAQ9UHF4 553 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 J3QLW9 94 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 LEFTY2O00292 366 aa12.1□□□□□ -0.47
NUP54-201ENST00000264883 TGM5O43548 720 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms