RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 OR2T12Q8NG77 320 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 OR52E4Q8NGH9 312 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 ARL5BQ96KC2 179 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 GPATCH1Q9BRR8 931 aaKnown RBP18.51■□□□□ 0.55
CLN3-240ENST00000631023 RBM24Q9BX46 236 aaKnown RBP18.51■□□□□ 0.55
CLN3-240ENST00000631023 RSPO3Q9BXY4 272 aaPredicted RBP18.51■□□□□ 0.55
CLN3-240ENST00000631023 OR11A1Q9GZK7 315 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 GP6Q9HCN6 339 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 TMEM181Q9P2C4 612 aa18.51■□□□□ 0.55
CLN3-240ENST00000631023 TESQ9UGI8 421 aaKnown RBP18.51■□□□□ 0.55
CLN3-240ENST00000631023 FAM220BPB1ANY3 271 aa18.5■□□□□ 0.55
CLN3-240ENST00000631023 LGI1O95970 557 aa18.5■□□□□ 0.55
CLN3-240ENST00000631023 HOXC5Q00444 222 aa18.5■□□□□ 0.55
CLN3-240ENST00000631023 DUSP7Q16829 419 aa18.5■□□□□ 0.55
CLN3-240ENST00000631023 GLIPR1L2Q4G1C9 344 aa18.5■□□□□ 0.55
CLN3-240ENST00000631023 GKAP1Q5VSY0 366 aaPredicted RBP18.5■□□□□ 0.55
CLN3-240ENST00000631023 RANBP3LQ86VV4 465 aaPredicted RBP18.5■□□□□ 0.55
CLN3-240ENST00000631023 OR6K3Q8NGY3 331 aa18.5■□□□□ 0.55
CLN3-240ENST00000631023 DNAJA4Q8WW22 397 aaPredicted RBP18.5■□□□□ 0.55
CLN3-240ENST00000631023 KLHL9Q9P2J3 617 aa18.5■□□□□ 0.55
CLN3-240ENST00000631023 CLEC4AQ9UMR7 237 aa18.5■□□□□ 0.55
CLN3-240ENST00000631023 PROCRQ9UNN8 238 aa18.5■□□□□ 0.55
CLN3-240ENST00000631023 CCT8L1PA6NM43 557 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 FAM107AO95990 144 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 IFNA14P01570 189 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 OPN1SWP03999 348 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 CD8BP10966 210 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 KCNJ5P48544 419 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 TMEM201Q5SNT2 666 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 SLC15A3Q8IY34 581 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 ABHD3Q8WU67 409 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 C3orf49Q96BT1 292 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 TACO1Q9BSH4 297 aaKnown RBP18.49■□□□□ 0.55
CLN3-240ENST00000631023 POTEKPQ9BYX7 375 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 TMEM27Q9HBJ8 222 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 SELENONQ9NZV5 590 aa18.49■□□□□ 0.55
CLN3-240ENST00000631023 ITPR2Q14571 2701 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 ELOVL7A1L3X0 281 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 A8MVM7 634 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 FESP07332 822 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 OR2B6P58173 313 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 SLC35A1P78382 337 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 RASGEF1BQ0VAM2 473 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 COMTD1Q86VU5 262 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 TAMM41Q96BW9 452 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 C12orf10Q9HB07 376 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 PLSCR4Q9NRQ2 329 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 CMTM6Q9NX76 183 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 KLHL13Q9P2N7 655 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 ADAM21Q9UKJ8 722 aa18.48■□□□□ 0.55
CLN3-240ENST00000631023 NAV2Q8IVL1 2488 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 IGHV3-15A0A0B4J1V0 119 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 ELOA3DA6NLF2 546 aaPredicted RBP18.47■□□□□ 0.55
CLN3-240ENST00000631023 EIF1BO60739 113 aaKnown RBP18.47■□□□□ 0.55
CLN3-240ENST00000631023 CYTIPO60759 359 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 CGAP01215 116 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 YES1P07947 543 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 SORDQ00796 357 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 ELOA3BQ3SY89 546 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 ULK3Q6PHR2 472 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 ATG4DQ86TL0 474 aaPredicted RBP18.47■□□□□ 0.55
CLN3-240ENST00000631023 STK32CQ86UX6 486 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 MICU2Q8IYU8 434 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 ELOA3Q8NG57 546 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 GALNT8Q9NY28 637 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 NOTCH2Q04721 2471 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 ZC3H12DA2A288 527 aaKnown RBP18.47■□□□□ 0.55
CLN3-240ENST00000631023 SMAD9O15198 467 aaKnown RBP18.47■□□□□ 0.55
CLN3-240ENST00000631023 FMO6PO60774 539 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 SHOX2O60902 331 aaPredicted RBP18.47■□□□□ 0.55
CLN3-240ENST00000631023 PNMTP11086 282 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 HTR2AP28223 471 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 AGTR1P30556 359 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 IDUAP35475 653 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 KIR2DL3P43628 341 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 SLC7A2P52569 658 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 LIPEQ05469 1076 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 BNIP2Q12982 314 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 ALG10BQ5I7T1 473 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 FAM91A1Q658Y4 838 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 C8orf82Q6P1X6 216 aaPredicted RBP18.47■□□□□ 0.55
CLN3-240ENST00000631023 GDF7Q7Z4P5 450 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 TUSC5Q8IXB3 177 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 GPR32P1Q8NGA4 272 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 STK35Q8TDR2 534 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 PROX1Q92786 737 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 DNAJA3Q96EY1 480 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 ARHGDIGQ99819 225 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 NAA11Q9BSU3 229 aaPredicted RBP18.47■□□□□ 0.55
CLN3-240ENST00000631023 OPN3Q9H1Y3 402 aaPredicted RBP18.47■□□□□ 0.55
CLN3-240ENST00000631023 FANCFQ9NPI8 374 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 ELOVL5Q9NYP7 299 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 KCNN3Q9UGI6 736 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 BAG5Q9UL15 447 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 USP22Q9UPT9 525 aa18.47■□□□□ 0.55
CLN3-240ENST00000631023 A0A1B0GWA3 101 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 GPIP06744 558 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 CD247P20963 164 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 CPOXP36551 454 aa18.46■□□□□ 0.55
CLN3-240ENST00000631023 PCYT1AP49585 367 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms