RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 GAS6Q14393 721 aa13.37□□□□□ -0.27
SHROOM1-208ENST00000617339 LGALSLQ3ZCW2 172 aaPredicted RBP13.37□□□□□ -0.27
SHROOM1-208ENST00000617339 BICRALQ6AI39 1079 aa13.37□□□□□ -0.27
SHROOM1-208ENST00000617339 ZNF836Q6ZNA1 936 aa13.37□□□□□ -0.27
SHROOM1-208ENST00000617339 GDF7Q7Z4P5 450 aa13.37□□□□□ -0.27
SHROOM1-208ENST00000617339 OR8J1Q8NGP2 316 aa13.37□□□□□ -0.27
SHROOM1-208ENST00000617339 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.37□□□□□ -0.27
SHROOM1-208ENST00000617339 MARC2Q969Z3 335 aa13.37□□□□□ -0.27
SHROOM1-208ENST00000617339 PPA2Q9H2U2 334 aa13.37□□□□□ -0.27
SHROOM1-208ENST00000617339 PCDHGB7Q9Y5F8 929 aa13.37□□□□□ -0.27
SHROOM1-208ENST00000617339 TICRRQ7Z2Z1 1910 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 CLDN4O14493 209 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 KHNYNO15037 678 aaKnown RBP13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 CDH11P55287 796 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 SMIM11AP58511 58 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 KIR2DS3Q14952 304 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 DCST2Q5T1A1 773 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 ZNF782Q6ZMW2 699 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 FRRS1Q6ZNA5 592 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 GKN2Q86XP6 184 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 MCATQ8IVS2 390 aaKnown RBP13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 PRRC1Q96M27 445 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 ATF6BQ99941 703 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 SLC2A4RGQ9NR83 387 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 ALPK3Q96L96 1907 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 TEX13CA0A0J9YWL9 993 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 RGS11O94810 467 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 APBB3O95704 486 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 PLATP00750 562 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 FAM157BP0CG42 384 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 CCR6P51684 374 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 HMGA2P52926 109 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 ATP12AP54707 1039 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 WNT4P56705 351 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 ILKQ13418 452 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 TRAM2Q15035 370 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 RTL4Q6ZR62 310 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 RASSF6Q6ZTQ3 369 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 SDR16C5Q8N3Y7 309 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 OR10H4Q8NGA5 316 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 OR13C2Q8NGS9 318 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 ZNF559Q9BR84 538 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 OR51J1Q9H342 316 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 SAV1Q9H4B6 383 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 RANBP3Q9H6Z4 567 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 SRFP11831 508 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 GRPRP30550 384 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 MEDAGQ5VYS4 303 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 FTMTQ8N4E7 242 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 OR2I1PQ8NGU4 316 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 APOBEC4Q8WW27 367 aaKnown RBP13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 ZFP3Q96NJ6 502 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 SECISBP2Q96T21 854 aaKnown RBP13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 THAP7Q9BT49 309 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 FOLH1BQ9HBA9 442 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 TAS2R7Q9NYW3 318 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 MRPL15Q9P015 296 aaKnown RBP13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 ERVK-19Q9WJR5 959 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 ZNF443Q9Y2A4 671 aaPredicted RBP13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 SIT1Q9Y3P8 196 aa13.36□□□□□ -0.27
SHROOM1-208ENST00000617339 A0A1W2PPL8 197 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 TOR1AO14656 332 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 LALBAP00709 142 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 HOXD4P09016 255 aaPredicted RBP13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 CD3GP09693 182 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 GNA13Q14344 377 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 PLK5Q496M5 336 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 OR2T35Q8NGX2 323 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 TMEM163Q8TC26 289 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 RBP7Q96R05 134 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 SERINC2Q96SA4 455 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 CCDC86Q9H6F5 360 aaKnown RBP13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 HEXA-AS1Q9H8Q6 139 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 ENOPH1Q9UHY7 261 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 KCNE5Q9UJ90 142 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 RPS10-NUDT3A0A1W2PQS6 291 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 PPM1BO75688 479 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 PIPP12273 146 aaPredicted RBP13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 CPEP16870 476 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 GIFP27352 417 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 LIMS1P48059 325 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 GPR139Q6DWJ6 353 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 TRILQ7L0X0 811 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 MS4A15Q8N5U1 240 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 SAMD12Q8N8I0 201 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 C10orf90Q96M02 699 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 ZNF582Q96NG8 517 aaPredicted RBP13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 MS4A4EQ96PG1 132 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 LRRC61Q9BV99 259 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 TEX12Q9BXU0 123 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 NT5DC2Q9H857 520 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 LRIT1Q9P2V4 623 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 PHF11Q9UIL8 331 aa13.35□□□□□ -0.27
SHROOM1-208ENST00000617339 DUXAA6NLW8 204 aa13.34□□□□□ -0.27
SHROOM1-208ENST00000617339 THY1P04216 161 aa13.34□□□□□ -0.27
SHROOM1-208ENST00000617339 BMP7P18075 431 aa13.34□□□□□ -0.27
SHROOM1-208ENST00000617339 TUSC1Q2TAM9 212 aa13.34□□□□□ -0.27
SHROOM1-208ENST00000617339 KLBQ86Z14 1044 aa13.34□□□□□ -0.27
SHROOM1-208ENST00000617339 COQ8AQ8NI60 647 aa13.34□□□□□ -0.27
SHROOM1-208ENST00000617339 RFT1Q96AA3 541 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms