RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 CYTIPO60759 359 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 GCM2O75603 506 aaPredicted RBP12.35□□□□□ -0.43
UPF1-205ENST00000598209 OR2B6P58173 313 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 VMACQ2NL98 169 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 TMEM201Q5SNT2 666 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 CALHM3Q86XJ0 350 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 TUSC5Q8IXB3 177 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 SMYD1Q8NB12 490 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 C3orf49Q96BT1 292 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 ZHX1-C8orf76Q96EF9 292 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 MYLK2Q9H1R3 596 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 C12orf49Q9H741 205 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 GP6Q9HCN6 339 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 KLHL28Q9NXS3 571 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 TMEM181Q9P2C4 612 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 KLHL9Q9P2J3 617 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 RPS6KB2Q9UBS0 482 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 ANKHD1Q8IWZ3 2542 aaKnown RBP12.35□□□□□ -0.43
UPF1-205ENST00000598209 ITPR2Q14571 2701 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 M0QX08 132 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 AIM2O14862 343 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 DNPH1O43598 174 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 OPN1SWP03999 348 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 IMPDH2P12268 514 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 POU2F1P14859 743 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 CD79BP40259 229 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 KCNJ5P48544 419 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 RGS8P57771 180 aaPredicted RBP12.34□□□□□ -0.43
UPF1-205ENST00000598209 FAM27E3Q08E93 113 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 RASGEF1BQ0VAM2 473 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 BNIP2Q12982 314 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 INTS11Q5TA45 600 aaKnown RBP12.34□□□□□ -0.43
UPF1-205ENST00000598209 NUFIP2Q7Z417 695 aaKnown RBP12.34□□□□□ -0.43
UPF1-205ENST00000598209 PATL1Q86TB9 770 aaKnown RBP12.34□□□□□ -0.43
UPF1-205ENST00000598209 ATG4DQ86TL0 474 aaPredicted RBP12.34□□□□□ -0.43
UPF1-205ENST00000598209 LINC01560Q8TB33 94 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 FAM222BQ8WU58 562 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 PSD2Q9BQI7 771 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 TACO1Q9BSH4 297 aaKnown RBP12.34□□□□□ -0.43
UPF1-205ENST00000598209 BCO1Q9HAY6 547 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 MCCC2Q9HCC0 563 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 ELOVL5Q9NYP7 299 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 ING1Q9UK53 422 aaPredicted RBP12.34□□□□□ -0.43
UPF1-205ENST00000598209 USP22Q9UPT9 525 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 TRAPPC4Q9Y296 219 aa12.34□□□□□ -0.43
UPF1-205ENST00000598209 A8MVM7 634 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 TMEM229AB2RXF0 380 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 LGI1O95970 557 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 YES1P07947 543 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 HTR2AP28223 471 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 PCYT1AP49585 367 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 NCALDP61601 193 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 SLC35A1P78382 337 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 DUSP7Q16829 419 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 EXOC3L2Q2M3D2 409 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 ABLIM2Q6H8Q1 611 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 ERICH5Q6P6B1 374 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 CCDC80Q76M96 950 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 STK32CQ86UX6 486 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 LSMEM1Q8N8F7 131 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 GPR32P1Q8NGA4 272 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 OR52E4Q8NGH9 312 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 SLC26A7Q8TE54 656 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 TAMM41Q96BW9 452 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 ZNF583Q96ND8 569 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 ZNF300Q96RE9 604 aaPredicted RBP12.33□□□□□ -0.44
UPF1-205ENST00000598209 WFDC6Q9BQY6 131 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 PRR14Q9BWN1 585 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 POTEKPQ9BYX7 375 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 TRIM2Q9C040 744 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 EVA1AQ9H8M9 152 aa12.33□□□□□ -0.44
UPF1-205ENST00000598209 TESQ9UGI8 421 aaKnown RBP12.33□□□□□ -0.44
UPF1-205ENST00000598209 A0A1B0GWA3 101 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 SH3D21A4FU49 640 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 ELOA3DA6NLF2 546 aaPredicted RBP12.32□□□□□ -0.44
UPF1-205ENST00000598209 CCT8L1PA6NM43 557 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 FAM220BPB1ANY3 271 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 ZNF814B7Z6K7 855 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 M0R3H8 397 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 C8BP07358 591 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 EPXP11678 715 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 CD247P20963 164 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 FPR1P21462 350 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 IDUAP35475 653 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 CEACAM7Q14002 265 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 ELOA3BQ3SY89 546 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 C6orf89Q6UWU4 347 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 ARPINQ7Z6K5 226 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 CCDC103Q8IW40 242 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 ELOA3Q8NG57 546 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 PIGXQ8TBF5 258 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 ZNF775Q96BV0 537 aaPredicted RBP12.32□□□□□ -0.44
UPF1-205ENST00000598209 CMTM5Q96DZ9 223 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 ARHGDIGQ99819 225 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 GPATCH1Q9BRR8 931 aaKnown RBP12.32□□□□□ -0.44
UPF1-205ENST00000598209 NAA11Q9BSU3 229 aaPredicted RBP12.32□□□□□ -0.44
UPF1-205ENST00000598209 EFCAB1Q9HAE3 211 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 CMTM6Q9NX76 183 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 AP3M1Q9Y2T2 418 aa12.32□□□□□ -0.44
UPF1-205ENST00000598209 ABCA12Q86UK0 2595 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms