RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MAP2K6P52564 334 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 ZNF311Q5JNZ3 666 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 DLEU7Q6UYE1 221 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 DHDDSQ86SQ9 333 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 GABRG1Q8N1C3 465 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 CLIP4Q8N3C7 705 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 DPP10Q8N608 796 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 NFKBIDQ8NI38 313 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 SLC35B4Q969S0 331 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 DDIT4LQ96D03 193 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 ZC3HAV1LQ96H79 300 aaKnown RBP13.42□□□□□ -0.26
TRIM28-205ENST00000595028 ZNF300Q96RE9 604 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-205ENST00000595028 ARMC7Q9H6L4 198 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 PLEKHF2Q9H8W4 249 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 FGFR1OP2Q9NVK5 253 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 C6orf203Q9P0P8 240 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-205ENST00000595028 PRDM4Q9UKN5 801 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 ZNF232Q9UNY5 417 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 PLEKHA6Q9Y2H5 1048 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 NDUFAF1Q9Y375 327 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 ROS1P08922 2347 aa13.42□□□□□ -0.26
TRIM28-205ENST00000595028 IGKV3D-15A0A087WSY6 115 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 ZNF724A8MTY0 619 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 EVPLLA8MZ36 301 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 GCM2O75603 506 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-205ENST00000595028 TROVE2P10155 538 aaKnown RBP eCLIP13.41□□□□□ -0.26
TRIM28-205ENST00000595028 PRG2P13727 222 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 GPX2P18283 190 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 PSMB1P20618 241 aaKnown RBP13.41□□□□□ -0.26
TRIM28-205ENST00000595028 IST1P53990 364 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 COPZ1P61923 177 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 CDK6Q00534 326 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 HSP90B2PQ58FF3 399 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 METTL21CQ5VZV1 264 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 ANKRD34AQ69YU3 496 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 WBP2NLQ6ICG8 309 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 C22orf34Q6ZV56 151 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 SERPINA11Q86U17 422 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 MTDHQ86UE4 582 aaKnown RBP13.41□□□□□ -0.26
TRIM28-205ENST00000595028 RETREG3Q86VR2 466 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 CADM2Q8N3J6 435 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 PIGXQ8TBF5 258 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 TSPEARQ8WU66 669 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 DNAJA3Q96EY1 480 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 REPIN1Q9BWE0 567 aaKnown RBP13.41□□□□□ -0.26
TRIM28-205ENST00000595028 ACTR6Q9GZN1 396 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 ADAM19Q9H013 955 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 OR10A4Q9H209 315 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 TMEM38AQ9H6F2 299 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 EMC3Q9P0I2 261 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 TMEM181Q9P2C4 612 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 TRAPPC4Q9Y296 219 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 GPR52Q9Y2T5 361 aa13.41□□□□□ -0.26
TRIM28-205ENST00000595028 ZC3H12DA2A288 527 aaKnown RBP13.4□□□□□ -0.26
TRIM28-205ENST00000595028 ZNF716A6NP11 495 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 THBDP07204 575 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 IMPDH2P12268 514 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 PRKAR1BP31321 381 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 OR3A2P47893 321 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 SCARB2Q14108 478 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 PDK3Q15120 406 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 RUNDC3AQ59EK9 446 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 CGB2Q6NT52 195 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 REEP3Q6NUK4 255 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 GALNT5Q7Z7M9 940 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 CXorf67Q86X51 503 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-205ENST00000595028 CGREF1Q99674 301 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 CXXC4Q9H2H0 198 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 MED4Q9NPJ6 270 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 EDARQ9UNE0 448 aa13.4□□□□□ -0.26
TRIM28-205ENST00000595028 RAI1Q7Z5J4 1906 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-205ENST00000595028 ZNF814B7Z6K7 855 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 FRS3O43559 492 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 RAF1P04049 648 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 DNASE1P24855 282 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 CXCR1P25024 350 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 EDNRAP25101 427 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 IDUAP35475 653 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 SLC16A1P53985 500 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 OR2B6P58173 313 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 SLC35A1P78382 337 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 H3F3AP84243 136 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 GUCY1A3Q02108 690 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 NFYCQ13952 458 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 ADRM1Q16186 407 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 DHRS4L2Q6PKH6 230 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 KRT73Q86Y46 540 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 HIPK4Q8NE63 616 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 STEAP2Q8NFT2 490 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 C3orf49Q96BT1 292 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 PIK3IP1Q96FE7 263 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 ANKRD27Q96NW4 1050 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 SPATA5L1Q9BVQ7 753 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 RSPO3Q9BXY4 272 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-205ENST00000595028 CCDC134Q9H6E4 229 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 CCM2LQ9NUG4 571 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-205ENST00000595028 PRSS50Q9UI38 385 aa13.39□□□□□ -0.27
TRIM28-205ENST00000595028 TMEM229AB2RXF0 380 aa13.38□□□□□ -0.27
TRIM28-205ENST00000595028 EIF1BO60739 113 aaKnown RBP13.38□□□□□ -0.27
TRIM28-205ENST00000595028 RAMP1O60894 148 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms