RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 HDGFL3Q9Y3E1 203 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 FN1P02751 2386 aaKnown RBP18.08■□□□□ 0.48
SHMT1-209ENST00000582653 IGKV3D-15A0A087WSY6 115 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 UBDO15205 165 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 PGM3O95394 542 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 ANP32DO95626 131 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 DBIP07108 87 aaKnown RBP18.07■□□□□ 0.48
SHMT1-209ENST00000582653 PCSK6P29122 969 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 IDUAP35475 653 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 CRATP43155 626 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 CLK1P49759 484 aaKnown RBP18.07■□□□□ 0.48
SHMT1-209ENST00000582653 TXNL4AP83876 142 aaKnown RBP18.07■□□□□ 0.48
SHMT1-209ENST00000582653 BSPH1Q075Z2 132 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 TNK1Q13470 666 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 ETFDHQ16134 617 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 GSTA3Q16772 222 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 TIMM23BQ5SRD1 257 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 VRK2Q86Y07 508 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 UBE2J2Q8N2K1 259 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 VPS33AQ96AX1 596 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 MUCL1Q96DR8 90 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 ZHX1-C8orf76Q96EF9 292 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 ZIM2Q9NZV7 527 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 EMC3Q9P0I2 261 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 TMEM181Q9P2C4 612 aa18.07■□□□□ 0.48
SHMT1-209ENST00000582653 ZC3H12DA2A288 527 aaKnown RBP18.06■□□□□ 0.48
SHMT1-209ENST00000582653 CFAP73A6NFT4 308 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 GKN3PP0CG01 181 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 IMPDH2P12268 514 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 COX5AP20674 150 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 SLC1A3P43003 542 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 HTR3AP46098 478 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 POLR2HP52434 150 aaKnown RBP18.06■□□□□ 0.48
SHMT1-209ENST00000582653 POLR2JP52435 117 aaKnown RBP18.06■□□□□ 0.48
SHMT1-209ENST00000582653 EPS8Q12929 822 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 GNA13Q14344 377 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 PPA1Q15181 289 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 CLEC12BQ2HXU8 276 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 PRIMA1Q86XR5 153 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 PEX5LQ8IYB4 626 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 ZNF433Q8N7K0 673 aaPredicted RBP18.06■□□□□ 0.48
SHMT1-209ENST00000582653 KBTBD8Q8NFY9 601 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 OR52P1PQ8NH57 321 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 TRIM2Q9C040 744 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 TPT1P8Q9HAU6 139 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 P2RX2Q9UBL9 471 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 USF3Q68DE3 2245 aa18.06■□□□□ 0.48
SHMT1-209ENST00000582653 INAFM1C9JVW0 142 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 KLF11O14901 512 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 BCHEP06276 602 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 TFPTP0C1Z6 253 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 ZCCHC18P0CG32 403 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 GGT1P19440 569 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 H3F3AP84243 136 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 PPP2R2BQ00005 443 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 PGGHGQ32M88 737 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 RPS26P11Q5JNZ5 115 aaPredicted RBP18.05■□□□□ 0.48
SHMT1-209ENST00000582653 FBXW9Q5XUX1 488 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 EPGNQ6UW88 154 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 ZNF836Q6ZNA1 936 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 PIGXQ8TBF5 258 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 SLC38A5Q8WUX1 472 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 PMM1Q92871 262 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 APH1AQ96BI3 265 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 DDIT4LQ96D03 193 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 ITCHQ96J02 903 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 GRIP2Q9C0E4 1043 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 RMND5AQ9H871 391 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 CISD1Q9NZ45 108 aaKnown RBP18.05■□□□□ 0.48
SHMT1-209ENST00000582653 TRAPPC4Q9Y296 219 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 MAGED1Q9Y5V3 778 aaPredicted RBP18.05■□□□□ 0.48
SHMT1-209ENST00000582653 USH1CQ9Y6N9 552 aa18.05■□□□□ 0.48
SHMT1-209ENST00000582653 A0A1W2PP18 115 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 CDHR4A6H8M9 788 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 FAAHO00519 579 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 ZNF208O43345 1280 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 DNPH1O43598 174 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 RAD51DO75771 328 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 THBS1P07996 1170 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 FOXG1P55316 489 aaPredicted RBP18.04■□□□□ 0.48
SHMT1-209ENST00000582653 DSTNP60981 165 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 C6orf10Q5SRN2 563 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 SLC2A7Q6PXP3 512 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 MIER2Q8N344 545 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 GTPBP3Q969Y2 492 aaKnown RBP18.04■□□□□ 0.48
SHMT1-209ENST00000582653 ADAM19Q9H013 955 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 NPAP1Q9NZP6 1156 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 ZANQ9Y493 2812 aa18.04■□□□□ 0.48
SHMT1-209ENST00000582653 DSPPQ9NZW4 1301 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 OR5H1A6NKK0 313 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 GPR171O14626 319 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 MRPL33O75394 65 aaKnown RBP18.03■□□□□ 0.48
SHMT1-209ENST00000582653 NUDT7P0C024 238 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 PRG2P13727 222 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 ACAA2P42765 397 aaKnown RBP18.03■□□□□ 0.48
SHMT1-209ENST00000582653 MAGEA8P43361 318 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 SLC16A1P53985 500 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 SLC35A1P78382 337 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 FAPQ12884 760 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 CLIP4Q8N3C7 705 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms