RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PIGKQ92643 395 aa9.93□□□□□ -0.82
CCDC40-207ENST00000572253 MYADMQ96S97 322 aa9.93□□□□□ -0.82
CCDC40-207ENST00000572253 HRASLSQ9HDD0 168 aa9.93□□□□□ -0.82
CCDC40-207ENST00000572253 FBXL4Q9UKA2 621 aa9.93□□□□□ -0.82
CCDC40-207ENST00000572253 A0A1W2PP55 124 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 OR5K3A6NET4 321 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 GABARAPH6UMI1 98 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 SCAMP1O15126 338 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 TMEM127O75204 238 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 NDUFB2O95178 105 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 LYPD3O95274 346 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 CEACAM5P06731 702 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 GABRA3P34903 492 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 PTGS2P35354 604 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 RPS21P63220 83 aaKnown RBP9.92□□□□□ -0.82
CCDC40-207ENST00000572253 SLC25A25Q6KCM7 469 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 SSX6Q7RTT6 188 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 SDR9C7Q8NEX9 313 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 DOK4Q8TEW6 326 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 PELI1Q96FA3 418 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 S100A16Q96FQ6 103 aaKnown RBP9.92□□□□□ -0.82
CCDC40-207ENST00000572253 MRI1Q9BV20 369 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 ZCCHC4Q9H5U6 513 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 CAPN10Q9HC96 672 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 PRDM9Q9NQV7 894 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 POLE3Q9NRF9 147 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 HCN3Q9P1Z3 774 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 PRELID1Q9Y255 219 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 SLC17A4Q9Y2C5 497 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 NPTNQ9Y639 398 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 A0A087WV62 115 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 A0A1B0GWA3 101 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 A0A1W2PPL8 197 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 L7N2F9 121 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 TIMP1P01033 207 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 ANKRD34CP0C6C1 535 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 RRASP10301 218 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 C5AR1P21730 350 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 RBM34P42696 430 aaKnown RBP9.92□□□□□ -0.82
CCDC40-207ENST00000572253 VEGFCP49767 419 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 ILF3Q12906 894 aaKnown RBP eCLIP9.92□□□□□ -0.82
CCDC40-207ENST00000572253 OPCMLQ14982 345 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 TCTE1Q5JU00 501 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 ELFN2Q5R3F8 820 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 HES5Q5TA89 166 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 PSRC1Q6PGN9 363 aaPredicted RBP9.92□□□□□ -0.82
CCDC40-207ENST00000572253 CHMP1BQ7LBR1 199 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 C1orf216Q8TAB5 229 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 ZNF296Q8WUU4 475 aaPredicted RBP9.92□□□□□ -0.82
CCDC40-207ENST00000572253 MKKSQ9NPJ1 570 aaPredicted RBP9.92□□□□□ -0.82
CCDC40-207ENST00000572253 DAPP1Q9UN19 280 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 PCDHGA9Q9Y5G4 932 aaKnown RBP9.92□□□□□ -0.82
CCDC40-207ENST00000572253 ARPC1BO15143 372 aaKnown RBP9.92□□□□□ -0.82
CCDC40-207ENST00000572253 SULT1B1O43704 296 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 HPXP02790 462 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 CD1AP06126 327 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 IL9P15248 144 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 DBPQ10586 325 aaPredicted RBP9.92□□□□□ -0.82
CCDC40-207ENST00000572253 GALNT11Q8NCW6 608 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 CLIP3Q96DZ5 547 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 LMAN2LQ9H0V9 348 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 PLEKHA1Q9HB21 404 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 TAS2R10Q9NYW0 307 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 KCMF1Q9P0J7 381 aa9.92□□□□□ -0.82
CCDC40-207ENST00000572253 MDC1Q14676 2089 aaKnown RBP9.92□□□□□ -0.82
CCDC40-207ENST00000572253 RPS10-NUDT3A0A1W2PQS6 291 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 CIB4A0PJX0 185 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 SCO1O75880 301 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 MPC2O95563 127 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 ZNF250P15622 560 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 HCCSP53701 268 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 PSMA6P60900 246 aaKnown RBP9.91□□□□□ -0.82
CCDC40-207ENST00000572253 RAP2BP61225 183 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 RUNX2Q13950 521 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 CDONQ4KMG0 1287 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 ALG10BQ5I7T1 473 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 FAM198BQ6UWH4 519 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 ARL14Q8N4G2 192 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 PCNPQ8WW12 178 aaKnown RBP9.91□□□□□ -0.82
CCDC40-207ENST00000572253 RBPMSQ93062 196 aaKnown RBP9.91□□□□□ -0.82
CCDC40-207ENST00000572253 HSPA12BQ96MM6 686 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 RBP7Q96R05 134 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 OR2M4Q96R27 311 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 DDOQ99489 341 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 NOX4Q9NPH5 578 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 MEPEQ9NQ76 525 aaPredicted RBP9.91□□□□□ -0.82
CCDC40-207ENST00000572253 PCDH10Q9P2E7 1040 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 ZNF69Q9UC07 566 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 POMT2Q9UKY4 750 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 SLC22A7Q9Y694 548 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 A0A0B4J2E0 115 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 A0A1B0GX12 115 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 CREBL2O60519 120 aaPredicted RBP9.91□□□□□ -0.82
CCDC40-207ENST00000572253 SRMP19623 302 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 SELENOPP49908 381 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 ZNHIT3Q15649 155 aaPredicted RBP9.91□□□□□ -0.82
CCDC40-207ENST00000572253 GAB4Q2WGN9 574 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 TMEM69Q5SWH9 247 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 C1orf53Q5VUE5 145 aa9.91□□□□□ -0.82
CCDC40-207ENST00000572253 DGLUCYQ7Z3D6 616 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms