RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 PTDSS2Q9BVG9 487 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 TRIM2Q9C040 744 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 LRMDAQ9H2I8 198 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 ARMC7Q9H6L4 198 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 MAN2C1Q9NTJ4 1040 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 KLHL28Q9NXS3 571 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 RHCGQ9UBD6 479 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 SEC14L4Q9UDX3 406 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 Q9UFV3 132 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 SLC7A8Q9UHI5 535 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 MAGEL2Q9UJ55 1249 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 SLC13A4Q9UKG4 626 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 BAG5Q9UL15 447 aa8.77□□□□□ -1.01
CLK3-208ENST00000562626 COL12A1Q99715 3063 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 MBD3L4A6NDZ8 208 aaPredicted RBP8.76□□□□□ -1.01
CLK3-208ENST00000562626 MBD3L3A6NE82 208 aaPredicted RBP8.76□□□□□ -1.01
CLK3-208ENST00000562626 MBD3L5A6NJ08 208 aaPredicted RBP8.76□□□□□ -1.01
CLK3-208ENST00000562626 FIGNL2A6NMB9 653 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 AHRRA9YTQ3 701 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 LRRN3E7EW58 273 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 E9PLN8 166 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 LINC01387J3KSC0 135 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 hCG_2039718K7EN88 272 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 SMAD9O15198 467 aaKnown RBP8.76□□□□□ -1.01
CLK3-208ENST00000562626 PIP5K1CO60331 668 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 FMO6PO60774 539 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 MT-ND1P03886 318 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 TFPIP10646 304 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 ENPP1P22413 925 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 GCKP35557 465 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 DIO1P49895 249 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 COPZ1P61923 177 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 LTBQ06643 244 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 PON3Q15166 354 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 SPATS1Q496A3 300 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 DNAL1Q4LDG9 190 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 IFI44LQ53G44 452 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 NSUN5P2Q63ZY6 315 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 B3GNT6Q6ZMB0 384 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 ESPNLQ6ZVH7 1005 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 RANBP3LQ86VV4 465 aaPredicted RBP8.76□□□□□ -1.01
CLK3-208ENST00000562626 MEX3DQ86XN8 651 aaKnown RBP8.76□□□□□ -1.01
CLK3-208ENST00000562626 PM20D2Q8IYS1 436 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 GCNT2Q8N0V5 402 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 ARHGAP24Q8N264 748 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 MEIOBQ8N635 442 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 MBD3L2Q8NHZ7 208 aaPredicted RBP8.76□□□□□ -1.01
CLK3-208ENST00000562626 RASSF5Q8WWW0 418 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 OSTF1Q92882 214 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 SLC38A4Q969I6 547 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 KTI12Q96EK9 354 aaPredicted RBP8.76□□□□□ -1.01
CLK3-208ENST00000562626 NSMCE2Q96MF7 247 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 VKORC1Q9BQB6 163 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 ADPRHL2Q9NX46 363 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 ACTR3BQ9P1U1 418 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 ING1Q9UK53 422 aaPredicted RBP8.76□□□□□ -1.01
CLK3-208ENST00000562626 SLC7A7Q9UM01 511 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 RNF6Q9Y252 685 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 SLC9A8Q9Y2E8 581 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 LRRK2Q5S007 2527 aa8.76□□□□□ -1.01
CLK3-208ENST00000562626 A0A087WUJ7 227 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 A0A1B0GUH1 482 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 TRAPPC13A5PLN9 417 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 WIPF3A6NGB9 483 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 CD8B2A6NJW9 211 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 ELOA3DA6NLF2 546 aaPredicted RBP8.75□□□□□ -1.01
CLK3-208ENST00000562626 FTCDNL1E5RQL4 147 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 ZNF208O43345 1280 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 CHP2O43745 196 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 IFNA14P01570 189 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 GABRA1P14867 456 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 UQCRBP14927 111 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 CXCR1P25024 350 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 EDNRAP25101 427 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 CEACAM8P31997 349 aaPredicted RBP8.75□□□□□ -1.01
CLK3-208ENST00000562626 HTR3AP46098 478 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 AGFG1P52594 562 aaKnown RBP8.75□□□□□ -1.01
CLK3-208ENST00000562626 UGT2B15P54855 530 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 ZNF239Q16600 458 aaKnown RBP8.75□□□□□ -1.01
CLK3-208ENST00000562626 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.75□□□□□ -1.01
CLK3-208ENST00000562626 ELOA3BQ3SY89 546 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 ZNF613Q6PF04 617 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 ULK3Q6PHR2 472 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 TMPPEQ6ZT21 453 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 DHFR2Q86XF0 187 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 RELL2Q8NC24 303 aaPredicted RBP8.75□□□□□ -1.01
CLK3-208ENST00000562626 ELOA3Q8NG57 546 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 RNF217Q8TC41 542 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 ABHD3Q8WU67 409 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 ITLN2Q8WWU7 325 aaPredicted RBP8.75□□□□□ -1.01
CLK3-208ENST00000562626 GEMIN6Q8WXD5 167 aaKnown RBP8.75□□□□□ -1.01
CLK3-208ENST00000562626 TAAR8Q969N4 342 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 ASB9Q96DX5 294 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 DTNBP1Q96EV8 351 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 SLC41A3Q96GZ6 507 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 PYURFQ96I23 114 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 PRRC1Q96M27 445 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 MOGAT1Q96PD6 335 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 ZNF426Q9BUY5 554 aa8.75□□□□□ -1.01
CLK3-208ENST00000562626 TMEM27Q9HBJ8 222 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms