RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CLK1P49759 484 aaKnown RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 POLR2HP52434 150 aaKnown RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 FOXG1P55316 489 aaPredicted RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 TNK1Q13470 666 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 GNA13Q14344 377 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 PDK3Q15120 406 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 MAPK11Q15759 364 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 GTDC1Q4AE62 458 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 PDCD4Q53EL6 469 aaKnown RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 MRPL2Q5T653 305 aaKnown RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 FBXW9Q5XUX1 488 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 ABLIM2Q6H8Q1 611 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 MAVSQ7Z434 540 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 CMIPQ8IY22 773 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 PEX5LQ8IYB4 626 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 GLB1L3Q8NCI6 653 aaPredicted RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 OR52N5Q8NH56 324 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 PIGXQ8TBF5 258 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 GTPBP3Q969Y2 492 aaKnown RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 APH1AQ96BI3 265 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 OR52B2Q96RD2 323 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 C1QTNF6Q9BXI9 259 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 TMBIM4Q9HC24 238 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 CISD1Q9NZ45 108 aaKnown RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 NPAP1Q9NZP6 1156 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 TRAPPC4Q9Y296 219 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 MAGED1Q9Y5V3 778 aaPredicted RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 CADP27708 2225 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 VPS13CQ709C8 3753 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 OR5H1A6NKK0 313 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 SHISA9B4DS77 424 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 OVOL3O00110 214 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 GPR171O14626 319 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 UBDO15205 165 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 PGM3O95394 542 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 ANP32DO95626 131 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 DANCRP0C864 163 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 COX5AP20674 150 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 RPS4Y1P22090 263 aaKnown RBP9.01□□□□□ -0.97
LDLR-214ENST00000560628 SLC1A3P43003 542 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 ZNF83P51522 516 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 MVDP53602 400 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 SLC35A1P78382 337 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 TXNL4AP83876 142 aaKnown RBP9.01□□□□□ -0.97
LDLR-214ENST00000560628 LRRC74AQ0VAA2 488 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 EPS8Q12929 822 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 BNIP2Q12982 314 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 CLEC12BQ2HXU8 276 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 PGGHGQ32M88 737 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 RPS26P11Q5JNZ5 115 aaPredicted RBP9.01□□□□□ -0.97
LDLR-214ENST00000560628 TIMM23BQ5SRD1 257 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 C9orf135Q5VTT2 229 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 CLIP4Q8N3C7 705 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 CADM2Q8N3J6 435 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 MAPK1IP1LQ8NDC0 245 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 OR52E4Q8NGH9 312 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 OR9I1Q8NGQ6 314 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 OR52P1PQ8NH57 321 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 SLC38A5Q8WUX1 472 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 PMM1Q92871 262 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 VPS33AQ96AX1 596 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 DDIT4LQ96D03 193 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 TRMT61AQ96FX7 289 aaKnown RBP9.01□□□□□ -0.97
LDLR-214ENST00000560628 AURKBQ96GD4 344 aaPredicted RBP9.01□□□□□ -0.97
LDLR-214ENST00000560628 ITCHQ96J02 903 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 MAELQ96JY0 434 aaKnown RBP9.01□□□□□ -0.97
LDLR-214ENST00000560628 NAA11Q9BSU3 229 aaPredicted RBP9.01□□□□□ -0.97
LDLR-214ENST00000560628 TRIM2Q9C040 744 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 ADAM19Q9H013 955 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 TPT1P8Q9HAU6 139 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 ASB6Q9NWX5 421 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 P2RX2Q9UBL9 471 aa9.01□□□□□ -0.97
LDLR-214ENST00000560628 CSPG4Q6UVK1 2322 aa9□□□□□ -0.97
LDLR-214ENST00000560628 NIPBLQ6KC79 2804 aaeCLIP9□□□□□ -0.97
LDLR-214ENST00000560628 RNF223E7ERA6 249 aa9□□□□□ -0.97
LDLR-214ENST00000560628 ABCD4O14678 606 aa9□□□□□ -0.97
LDLR-214ENST00000560628 ZNF208O43345 1280 aa9□□□□□ -0.97
LDLR-214ENST00000560628 DNPH1O43598 174 aa9□□□□□ -0.97
LDLR-214ENST00000560628 TMCC2O75069 709 aa9□□□□□ -0.97
LDLR-214ENST00000560628 NDUFS7O75251 213 aa9□□□□□ -0.97
LDLR-214ENST00000560628 AKR7A3O95154 331 aa9□□□□□ -0.97
LDLR-214ENST00000560628 CD8AP01732 235 aa9□□□□□ -0.97
LDLR-214ENST00000560628 BCHEP06276 602 aa9□□□□□ -0.97
LDLR-214ENST00000560628 TFPTP0C1Z6 253 aa9□□□□□ -0.97
LDLR-214ENST00000560628 PRG2P13727 222 aa9□□□□□ -0.97
LDLR-214ENST00000560628 CXCR1P25024 350 aa9□□□□□ -0.97
LDLR-214ENST00000560628 ACVR1BP36896 505 aa9□□□□□ -0.97
LDLR-214ENST00000560628 ACAA2P42765 397 aaKnown RBP9□□□□□ -0.97
LDLR-214ENST00000560628 POLR2JP52435 117 aaKnown RBP9□□□□□ -0.97
LDLR-214ENST00000560628 SLC16A1P53985 500 aa9□□□□□ -0.97
LDLR-214ENST00000560628 SLC18A1P54219 525 aa9□□□□□ -0.97
LDLR-214ENST00000560628 DSTNP60981 165 aa9□□□□□ -0.97
LDLR-214ENST00000560628 H3F3AP84243 136 aa9□□□□□ -0.97
LDLR-214ENST00000560628 CEACAM7Q14002 265 aa9□□□□□ -0.97
LDLR-214ENST00000560628 VEZF1Q14119 521 aa9□□□□□ -0.97
LDLR-214ENST00000560628 OR7A5Q15622 319 aa9□□□□□ -0.97
LDLR-214ENST00000560628 GSTA3Q16772 222 aa9□□□□□ -0.97
LDLR-214ENST00000560628 C6orf10Q5SRN2 563 aa9□□□□□ -0.97
LDLR-214ENST00000560628 BEND6Q5SZJ8 279 aaPredicted RBP9□□□□□ -0.97
LDLR-214ENST00000560628 CASP12Q6UXS9 341 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms