RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CTSHP09668 335 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 HKR1P10072 659 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 ACP2P11117 423 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 PKMP14618 531 aaKnown RBP12.8□□□□□ -0.36
SHMT2-226ENST00000556825 OR1E2P47887 323 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 PNLIPRP3Q17RR3 467 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 ODF4Q2M2E3 257 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 MST1LQ2TV78 715 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 C11orf88Q6PI97 169 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 OGFOD3Q6PK18 319 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 HMGB4Q8WW32 186 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 LINGO1Q96FE5 620 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 GPR21Q99679 349 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 LRTM1Q9HBL6 345 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 PTGFRNQ9P2B2 879 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 SIX4Q9UIU6 781 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 KPTNQ9Y664 436 aa12.8□□□□□ -0.36
SHMT2-226ENST00000556825 A0A1W2PN81 502 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 MOXD2PA6NHM9 499 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 ZNF587BE7ETH6 402 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 J3KTA2 159 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 DVL2O14641 736 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 OGG1O15527 345 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 TSPAN2O60636 221 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 CTNSO60931 367 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 ABLIM3O94929 683 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 PCDH8O95206 1070 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 BCHEP06276 602 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 SNRNP70P08621 437 aaKnown RBP12.79□□□□□ -0.36
SHMT2-226ENST00000556825 IGFBP1P08833 259 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-226ENST00000556825 CHRNA7P36544 502 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 RPS14P62263 151 aaKnown RBP12.79□□□□□ -0.36
SHMT2-226ENST00000556825 EIF5AP63241 154 aaKnown RBP12.79□□□□□ -0.36
SHMT2-226ENST00000556825 LSM11P83369 360 aaKnown RBP eCLIP12.79□□□□□ -0.36
SHMT2-226ENST00000556825 CSRP2Q16527 193 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 CHRFAM7AQ494W8 412 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 C1orf185Q5T7R7 199 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 GLT8D1Q68CQ7 371 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 MED27Q6P2C8 311 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 ULK3Q6PHR2 472 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 IQCHQ86VS3 1027 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 TTC16Q8NEE8 873 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 NUBPLQ8TB37 319 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 MYEOVQ96EZ4 313 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 ACPTQ9BZG2 426 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 GPR62Q9BZJ7 368 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 UBQLN4Q9NRR5 601 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 TVP23BQ9NYZ1 205 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 PRODH2Q9UF12 536 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 PPT2Q9UMR5 302 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 LTBP3Q9NS15 1303 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 MYLKQ15746 1914 aa12.79□□□□□ -0.36
SHMT2-226ENST00000556825 NPEPPSL1A6NEC2 478 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 PRAMEF25A6NGN4 478 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 FAM183AA6NL82 134 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 GABRDO14764 452 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 GCM2O75603 506 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-226ENST00000556825 CD5P06127 495 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 SOD3P08294 240 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 UCHL1P09936 223 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 SLC25A4P12235 298 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 CD46P15529 392 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 AQP1P29972 269 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 GJA5P36382 358 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 XCR1P46094 333 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 CNTN1Q12860 1018 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 MEF2DQ14814 521 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 SLC25A52Q3SY17 297 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 AWAT1Q58HT5 328 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 OR2A2Q6IF42 318 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 FAM199XQ6PEV8 388 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-226ENST00000556825 PAQR3Q6TCH7 311 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 LINGO2Q7L985 606 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 SCD5Q86SK9 330 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 MMP21Q8N119 569 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 ACBD4Q8NC06 268 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 TERB2Q8NHR7 220 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 NUDCD2Q8WVJ2 157 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 HSPA12BQ96MM6 686 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 FSD1LQ9BXM9 530 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 TMEM134Q9H6X4 195 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 FN3KRPQ9HA64 309 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 SEPSECSQ9HD40 501 aaKnown RBP12.78□□□□□ -0.36
SHMT2-226ENST00000556825 CHRNA9Q9UGM1 479 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 TRIP11Q15643 1979 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 A0A0G2JK05 382 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 F5H0A9 414 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-226ENST00000556825 FAM72CH0Y354 149 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 CDC14BO60729 498 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 ZNF821O75541 412 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-226ENST00000556825 SOX14O95416 240 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 CD74P04233 296 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 TMIGD3P0DMS9 266 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-226ENST00000556825 LAMP1P11279 417 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 TYRP1P17643 537 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 CCND3P30281 292 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-226ENST00000556825 BMI1P35226 326 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 PCGF2P35227 344 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 SERPINF1P36955 418 aa12.78□□□□□ -0.36
SHMT2-226ENST00000556825 ZNF84P51523 738 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms