RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 C6orf203Q9P0P8 240 aaPredicted RBP14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 TRIM33Q9UPN9 1127 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 TMED7Q9Y3B3 224 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 CHST2Q9Y4C5 530 aa14.24□□□□□ -0.13
CCDC88C-209ENST00000554872 RAI1Q7Z5J4 1906 aaPredicted RBP14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 ZNF814B7Z6K7 855 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 FZD7O75084 574 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 PGM3O95394 542 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 ARAFP10398 606 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 TFPIP10646 304 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 GPX2P18283 190 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 TACR3P29371 465 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 ITGADQ13349 1161 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 KEAP1Q14145 624 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 POU4F3Q15319 338 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 PAGE3Q5JUK9 113 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 WBP2NLQ6ICG8 309 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 CXorf67Q86X51 503 aaPredicted RBP14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 DPP10Q8N608 796 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 TMEM204Q9BSN7 226 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 OR11A1Q9GZK7 315 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 PIF1Q9H611 641 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 VAPAQ9P0L0 249 aa14.23□□□□□ -0.13
CCDC88C-209ENST00000554872 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 TMEM72A0PK05 275 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 TMCC2O75069 709 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 NUDT7P0C024 238 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 KLK2P20151 261 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 FPR1P21462 350 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 PRKAR1BP31321 381 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 SLC35A1P78382 337 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 AGKQ53H12 422 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 RPS26P11Q5JNZ5 115 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 GCNT6Q5T4J0 391 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 PAQR6Q6TCH4 344 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 DLEU7Q6UYE1 221 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 C20orf204Q6ZNR8 217 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 KISS1RQ969F8 398 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 PIK3IP1Q96FE7 263 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 ZNF300Q96RE9 604 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 C12orf10Q9HB07 376 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 SLAMF8Q9P0V8 285 aa14.22□□□□□ -0.13
CCDC88C-209ENST00000554872 TMEM229AB2RXF0 380 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 NPIPB7O75200 414 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 IMPDH2P12268 514 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 COPZ1P61923 177 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 ZNF311Q5JNZ3 666 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 C1QTNF12Q5T7M4 302 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 ANKRD34AQ69YU3 496 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 REEP3Q6NUK4 255 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 DHRS4L2Q6PKH6 230 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 C6orf89Q6UWU4 347 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 TGIF2LYQ8IUE0 185 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 LRRC75A-AS1Q8N1F1 130 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 CLIP4Q8N3C7 705 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 BHLHE22Q8NFJ8 381 aaPredicted RBP14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 HSD17B8Q92506 261 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 MAL2Q969L2 176 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 S100PBPQ96BU1 408 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 HS3ST6Q96QI5 342 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 CPPED1Q9BRF8 314 aaPredicted RBP14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 TMUB1Q9BVT8 246 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 EVA1AQ9H8M9 152 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 MALT1Q9UDY8 824 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 LEF1Q9UJU2 399 aaPredicted RBP14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 FREM1Q5H8C1 2179 aa14.21□□□□□ -0.13
CCDC88C-209ENST00000554872 MTORP42345 2549 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 EVPLLA8MZ36 301 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 C5orf58C9J3I9 102 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 ADAP00813 363 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 GKN3PP0CG01 181 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 IL32P24001 234 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 CXCR1P25024 350 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 IDUAP35475 653 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 CDK6Q00534 326 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 ACKR1Q16570 336 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 FBXW9Q5XUX1 488 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 ADAM5Q6NVV9 412 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 SEZ6L2Q6UXD5 910 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 P2RY8Q86VZ1 359 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 KRT73Q86Y46 540 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 C10orf111Q8N326 155 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 LSMEM1Q8N8F7 131 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 STK35Q8TDR2 534 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 IGFBPL1Q8WX77 278 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 PIGTQ969N2 578 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 C3orf49Q96BT1 292 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 ZC3HAV1LQ96H79 300 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 NAA11Q9BSU3 229 aaPredicted RBP14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 SPATA5L1Q9BVQ7 753 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 SF3B5Q9BWJ5 86 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 IKZF5Q9H5V7 419 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 NPHS2Q9NP85 383 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 NGBQ9NPG2 151 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 SLC9A8Q9Y2E8 581 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 MED13LQ71F56 2210 aa14.2□□□□□ -0.14
CCDC88C-209ENST00000554872 ZC3H12DA2A288 527 aaKnown RBP14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 PRORSD1PA6NEY8 169 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 LIPT2A6NK58 231 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 A8MVM7 634 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms