RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 H0YAE9 185 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 NUDT14O95848 222 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 GSTM3P21266 225 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 IDH2P48735 452 aaKnown RBP13.12□□□□□ -0.31
SHMT2-208ENST00000553868 CYB561P49447 251 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 HLCSP50747 726 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 SOX8P57073 446 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 ADORA2A-AS1P86434 159 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 FOXD4Q12950 439 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-208ENST00000553868 TTC23Q5W5X9 447 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 TSPYL5Q86VY4 417 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-208ENST00000553868 CDK20Q8IZL9 346 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 ZNF555Q8NEP9 628 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 PAQR8Q8TEZ7 354 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 DUSP19Q8WTR2 217 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 TMEM234Q8WY98 164 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 PSMF1Q92530 271 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 DTNBP1Q96EV8 351 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 SH3YL1Q96HL8 342 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-208ENST00000553868 ADI1Q9BV57 179 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 DGCR6LQ9BY27 220 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 C12orf10Q9HB07 376 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 STMN3Q9NZ72 180 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 ICAM5Q9UMF0 924 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 TMEM5Q9Y2B1 443 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 LRCH1Q9Y2L9 728 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 WIF1Q9Y5W5 379 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 AP4B1Q9Y6B7 739 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 CHCHD2Q9Y6H1 151 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-208ENST00000553868 DOCK10Q96BY6 2186 aa13.12□□□□□ -0.31
SHMT2-208ENST00000553868 NSD1Q96L73 2696 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-208ENST00000553868 A0A087WUU8 490 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 IGLV3-32A0A0A0MS00 114 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 FAM221AA4D161 298 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 ANKRD33BA6NCL7 494 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 OIP5O43482 229 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 SNX4O95219 450 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 P04436 131 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 CBLP22681 906 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 CAPGP40121 348 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 CASP3P42574 277 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 SLC1A3P43003 542 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 DAPP51397 102 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 RPS6KA3P51812 740 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 TDGF1P3P51864 188 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 IL1RL1Q01638 556 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 MERTKQ12866 999 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 COX10Q12887 443 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 MED21Q13503 144 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 ZNF169Q14929 603 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-208ENST00000553868 SEC23BQ15437 767 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 NHSL2Q5HYW2 709 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 B3GNTL1Q67FW5 361 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-208ENST00000553868 ZNF770Q6IQ21 691 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-208ENST00000553868 TTC33Q6PID6 262 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-208ENST00000553868 CBLN3Q6UW01 205 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 FAM180AQ6UWF9 173 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 RPTNQ6XPR3 784 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 MBOAT2Q6ZWT7 520 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 CYP4Z2PQ8N1L4 340 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 BEST3Q8N1M1 668 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 PARP8Q8N3A8 854 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 OR9Q2Q8NGE9 314 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 GNPDA2Q8TDQ7 276 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 TMEM239Q8WW34 195 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 SMR3AQ99954 134 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 UTP23Q9BRU9 249 aaKnown RBP13.11□□□□□ -0.31
SHMT2-208ENST00000553868 ANGPTL4Q9BY76 406 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 TMEFF2Q9UIK5 374 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-208ENST00000553868 RPH3AQ9Y2J0 694 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-208ENST00000553868 MED31Q9Y3C7 131 aa13.11□□□□□ -0.31
SHMT2-208ENST00000553868 FN1P02751 2386 aaKnown RBP13.11□□□□□ -0.31
SHMT2-208ENST00000553868 NCOA6Q14686 2063 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-208ENST00000553868 ELOA3DA6NLF2 546 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-208ENST00000553868 DENRO43583 198 aaKnown RBP13.1□□□□□ -0.31
SHMT2-208ENST00000553868 MAN1A2O60476 641 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 CDC40O60508 579 aaKnown RBP eCLIP13.1□□□□□ -0.31
SHMT2-208ENST00000553868 SNAP29O95721 258 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 HTR3AP46098 478 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 GAS1P54826 345 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 OC90Q02509 493 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-208ENST00000553868 ELOA3BQ3SY89 546 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 C6orf52Q5T4I8 152 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 AGAP7PQ5VUJ5 663 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 C1orf94Q6P1W5 598 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 PGBD2Q6P3X8 592 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 GFRALQ6UXV0 394 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 NKAIN4Q8IVV8 208 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 ELOA3Q8NG57 546 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 CYGBQ8WWM9 190 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 ST8SIA1Q92185 356 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 TFAP2CQ92754 450 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 AGAP4Q96P64 663 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 RTN4RQ9BZR6 473 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 SLC19A3Q9BZV2 496 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 UCK2Q9BZX2 261 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 TOR3AQ9H497 397 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 PTGES2Q9H7Z7 377 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 GALNT9Q9HCQ5 603 aa13.1□□□□□ -0.31
SHMT2-208ENST00000553868 TIMMDC1Q9NPL8 285 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms